Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq520 233 3e-56 seq1210 183 4e-41 seq1436 127 3e-24 seq322 127 3e-24 seq1039 107 3e-18 seq933 104 3e-17 seq23 102 1e-16 seq1642 100 4e-16 seq1740 87.8 3e-12 >seq520 Length=294854 Score = 233 bits (258), Expect = 3e-56 Identities = 562/846 (66%), Gaps = 8/846 (1%) Strand=Plus/Plus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 |||||| | ||||| || || ||||| || || || || || || | | ||| || Sbjct 261798 AGCTTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAAT 261857 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAA-TTCGT 17978 || | ||| ||||||| ||||| |||||| ||||||| | || ||| Sbjct 261858 CAATTCCATCCAATCAAAAGGATTCTGAACATTATAA-ATTTTTCCACAACCAAGTTCAC 261916 Query 17979 ATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTA 18038 ||||||||||| || ||||| || | |||||| ||||||||| | ||||| || | Sbjct 261917 CCAATAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAA 261976 Query 18039 GTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTA 18098 | |||| || || ||| || ||||||| |||| || ||||| | || | Sbjct 261977 CCAAAGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGAA 262036 Query 18099 TTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAAC 18158 || || | || | | | || | | | || || | | |||| | ||||| Sbjct 262037 CAATAGTTTTCACAC--GCTCTTCACTAAGT-TTCTTTCTCAAAAGCGAATAAAGTAAAC 262093 Query 18159 ACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACC 18218 | ||||||||| || | |||||| || | || || | ||||| ||| ||||| | Sbjct 262094 AAGCAAAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAAC 262153 Query 18219 CGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATA 18278 | ||||||| ||| | |||||| |||||||| || || |||||||| || || |||| Sbjct 262154 CAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACTACCGGAGAAAAATA 262213 Query 18279 TACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTA 18338 |||| ||||| || || || || | | |||||||||||| || || || | | Sbjct 262214 TACCTTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAA--TGAATCAGATGAATCG-A 262270 Query 18339 TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAA 18398 ||||||| ||||| || ||| ||||| || || | || || |||| || Sbjct 262271 TCCATTTCATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGAA 262330 Query 18399 ACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTT 18458 | ||| || ||||| | ||||| || |||||||| || || || | | |||||||| Sbjct 262331 ATAAACGATTCTTTTCGATAGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTT 262390 Query 18459 CAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATT 18518 ||||||| ||| |||| || || ||||| |||| ||||| | | ||||| | || Sbjct 262391 CAGAATGAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTT 262450 Query 18519 GAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGA 18578 ||| || | |||||| | | | |||||| ||||||||||| | | || | Sbjct 262451 GAACTTCTTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCAA 262510 Query 18579 AAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCATTCAT 18638 | || || | ||| | | ||||| || ||| || | || |||||||| | | Sbjct 262511 AGAAAGCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGAG 262570 Query 18639 CTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGT 18698 | ||||| ||| ||||| |||||||| | |||||| || || | |||||| | ||||| Sbjct 262571 GAAGATCTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTGT 262630 Query 18699 ACATTT 18704 |||||| Sbjct 262631 ACATTT 262636 >seq1210 Length=122563 Score = 183 bits (202), Expect = 4e-41 Identities = 536/821 (65%), Gaps = 8/821 (1%) Strand=Plus/Minus Query 17885 TTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAATGGATTA 17944 ||||| || || || || || || | | || || |||| ||| ||||||| ||||| Sbjct 43106 TTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAAATCCATCCAATCAAAAGGATTC 43047 Query 17945 GTGGTTTTATAATATTTTTCTTGTATTAAT-TCGTATAATAATCTATCTGCTACAAATTC 18003 |||||| ||||| | | || || | || |||||||| || ||||| || Sbjct 43046 TGAACATTATAA-ATTTTCCCACAACCAAGCTCACACAACAATCTATCAGCAACAAACTC 42988 Query 18004 GACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCATCAAT 18063 | ||| || ||||||||| | |||||| || | || | |||| || || || Sbjct 42987 AATATACTGACTCATCAAATCACCATTCATTCCAACTAAAGCGCAAGGAAGCGCTTCGCA 42928 Query 18064 AATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCCTAGATTTTGG 18123 || ||||||| |||| |||||||||| || | || | | || | | | || | Sbjct 42927 AACAAATTCTCTCTCGATCTCAACAGCATCGCGCACAATCGTCTTCACAC--GCTCTTCG 42870 Query 18124 CAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTGTAAACCTTC 18183 | | | || || | | |||| | ||||| ||||||||| || | ||||| Sbjct 42869 CTAAGT-TTCTTTCTCAAAAGCGAATAAATCAAACAAGCAAAATCACAATGAAGTCCTTC 42811 Query 18184 ATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCttttttttAG 18243 || | || || | ||||| ||| ||||| || ||||||| ||| | |||||| || Sbjct 42810 GTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCATTAAACCACGTTTTTTAAG 42751 Query 18244 CCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCGAACGCTAT 18303 ||| || || | |||||| | ||| || |||||||| ||||| || || || || | Sbjct 42750 CCAGAAAATTGCACAGAAACTTCCAGAGAAAAATATACCTTCAACACAAGCAAAAGCAAC 42691 Query 18304 TAATCTTTCAGCAAAACTGTATTTATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTN 18363 | ||||||||||| || || || | |||||||| ||||| || ||| Sbjct 42690 GATCCTTTCAGCAAA--TGAATCAGATGAATCG-ATCCATTTCATAGCCCAATCAGCTTT 42634 Query 18364 NNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATC 18423 ||||| || || | || || |||| ||||||| || || || ||||| Sbjct 42633 CTTTGTAATACAAGGAATCGTTTCAATTGCATGAAACAAACGATTCTTCTCAACTGAATC 42574 Query 18424 TTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTAT 18483 || |||||||| || || || | | ||||||||||||||| || | || || || || Sbjct 42573 ATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGAATGAATATTCTCGATTGCGAT 42514 Query 18484 CTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTAC 18543 ||| || | || || | | ||||| | ||||| || | |||||| || | Sbjct 42513 CTGGAATCCGTAGAAAGCACGCGCCTCTGAGACTTGAACTTCTTTCATGAATCTTCCTGC 42454 Query 18544 CAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAA 18603 | |||||| || || ||||| | || || || || || | ||| | | || || Sbjct 42453 AAGATTCTCCAAGACGATGCCGTCGGAAGCGGCAAAGAAGGCAAGAACGTGTGAGATAAA 42394 Query 18604 ATGTTTTTCATTATCCTTGAGATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTC 18663 || ||| || | || |||||||| | || | ||||| |||| ||| ||||| Sbjct 42393 GTGGCGTTCGCCGTCGGTTAGGTTGTTCCAGTGATGAAGATCTTCCGATAAATCGACTTC 42334 Query 18664 TTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTACATTT 18704 ||| | ||||| ||||| | |||||| | ||||||||||| Sbjct 42333 TTCGGCGGTCCAGAAAGAAGCTTCGGCTTTTTTGTACATTT 42293 >seq1436 Length=88924 Score = 127 bits (140), Expect = 3e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | ||||||||||| || ||| | ||||| ||| || Sbjct 38991 ATGCAAATCTTTGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCC 38932 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| || || || ||||||||||| || ||||| || || Sbjct 38931 GACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCTGATCAG 38872 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||| || ||||| | |||||| |||||| | | ||||||||| Sbjct 38871 CAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAAT 38812 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| | ||||||||||||||| Sbjct 38811 ATCCAGAAAGAGTCCACGCTTCATTTAGTG 38782 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | ||||||||||| || ||| | ||||| ||| ||| Sbjct 7264 ATGCAAATCTTCGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCT 7205 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| || || || ||||||||||| || ||||| || || Sbjct 7204 GACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATTCCTCCTGATCAG 7145 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||| || ||||| | |||||| |||||| | | ||||||||| Sbjct 7144 CAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAAT 7085 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | ||||||||||| || Sbjct 7084 ATCCAGAAAGAGTCTACGCTTCATTTGGT 7056 Score = 100 bits (110), Expect = 4e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| || || |||||||| | || || || |||| Sbjct 38763 ATGCAGATTTTTGTGAAGACGTTGACGGGGAAGACTATTACTCTTGAGGTGGAGAGTTCT 38704 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || ||||| || || |||||||| || || || || || || || Sbjct 38703 GATACTATTGATAATGTGAAGGCGAAGATTCAAGATAAGGAGGGGATTCCACCTGATCAG 38644 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||||| | ||||||||| ||||| || ||| || ||| | | ||||||||| Sbjct 38643 CAGCGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGAAGGACTCTTGCTGATTATAAT 38584 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || ||||| | || ||||| Sbjct 38583 ATTCAGAAAGAATCTACTCTTCA 38561 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || ||||| || || || ||||| | || || || ||| Sbjct 7037 AATGCAGATTTTTGTGAAGACGTTGACCGGGAAGACGATTACTCTTGAGGTTGAGAGTTC 6978 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| |||| |||||||| || || ||||| || || || || || || || || Sbjct 6977 TGATACTATTGATAACGTGAAGGCGAAGATTCAAGACAAGGAGGGTATTCCACCTGATCA 6918 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || ||||||| | ||||||||| ||||| || ||| | ||| | | |||||||| Sbjct 6917 GCAGCGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGACGGACTCTTGCTGATTATAA 6858 Query 156002 TAT 156004 ||| Sbjct 6857 TAT 6855 >seq322 Length=397916 Score = 127 bits (140), Expect = 3e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || ||||| |||||||||||||| || || || || ||| Sbjct 312302 AATGCAAATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTGGAGGTTGAGAGTTC 312243 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| || |||||| ||| || || |||||||| || || |||||||| || Sbjct 312242 AGATACTATCGATAATGTGAAAGCTAAGATTCAGGATAAAGAGGGAATCCCTCCAGATCA 312183 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| || || ||||| || ||| ||||| || | ||||| || Sbjct 312182 GCAGAGGCTTATCTTTGCAGGGAAACAGCTTGAGGATGGAAGAACCCTAGCTGATTACAA 312123 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| || || | || |||||||| || | ||||| ||||| || Sbjct 312122 CATACAGAAGGAATCTACCCTTCATTTGGTACTTAGATTGAGAGGTGG 312075 Score = 122 bits (134), Expect = 1e-22 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || ||||| |||||||||||||| ||||| || || ||| Sbjct 312074 AATGCAAATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTAGAGGTTGAGAGTTC 312015 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| |||| || |||||| ||| || || ||||| || || || |||||||| || Sbjct 312014 AGATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAGGGTATCCCTCCAGATCA 311955 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| |||||||| || || ||| ||||| | | ||||||| Sbjct 311954 GCAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTGCTGATTATA- 311896 Query 156002 TATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 | ||||||| || | || || ||||| || || Sbjct 311895 -ACATCCAAAAGGAATCCACTCTCCATTTGGTTTT 311862 Score = 98.7 bits (108), Expect = 1e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGA-AGATTC 155881 |||||||| ||| |||| || | |||||||| || || || || || || || || ||| Sbjct 333409 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACTTTGGAGGTTGAGAGTTTC 333350 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| |||| || |||||| ||||| || |||||||| || || |||| || || Sbjct 333349 -GATACTATTGACAATGTGAAAGCAAAAATTCAGGATAAAGAGGGTATTCCTCTGGACCA 333291 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | |||| |||||| |||||| | |||||| | ||| | | |||||||| Sbjct 333290 GCAGAGGCTAATTTTTGCCGGCAAGCAGTTGGAAGATGGTTGTACTCTGGCTGATTATAA 333231 Query 156002 TAT 156004 ||| Sbjct 333230 TAT 333228 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | |||||||| || || || || || || || ||| Sbjct 311845 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACTTTGGAGGTTGAGAGTTCC 311786 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || |||||| || || ||||||||||| || || |||||||| || Sbjct 311785 GACACTATTGACAATGTGAAAGCAAAGATTCAAGATAAAGAGGGTATTCCTCCAGACCAG 311726 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || | |||| |||||| |||||| | |||||| Sbjct 311725 CAGAGGCTAATTTTTGCCGGGAAGCAGTTGGAAGAT 311690 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| |||| || |||||||||||||| || || | || || ||| || Sbjct 312757 ATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCC 312698 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || || || ||||| ||||| ||||| || || Sbjct 312697 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 312638 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || ||||| || || ||| ||||| || | ||||| || Sbjct 312637 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 312578 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || || | || |||||||| ||| | ||||| ||||| || Sbjct 312577 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGG 312531 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||||||||| || ||||| || || | || || || |||| Sbjct 312985 ATGCAAATTTTCGTGAAAACATTGACCGGTAAAACCATCACCCTTGAGGTGGAGATTTCT 312926 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || ||| ||| || ||||| || ||||| || || || || || Sbjct 312925 GATACCATAGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCTGATCAG 312866 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||||||||| || | |||||| | | || | | ||||| | Sbjct 312865 CAAAGGCTTATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACCCTTGCGGATTACA-- 312808 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 | ||||||| ||| | || ||||| | ||| | | ||||| ||||| Sbjct 312807 ACATCCAAAAGGAGTCCACCCTTCACCTTGTGCTGCGGTTAAGGGGCGG 312759 >seq1039 Length=240209 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || | |||||||| || || || | || || || |||| Sbjct 129302 ATGCAGATCTTTGTTAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTAGAGAGTTCT 129243 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || || ||||||||||||||||| || || ||||| || Sbjct 129242 GACACCATAGACAATGTCAAGGCCAAGATACAAGATAAAGAAGGTATTCCCCCAGATCAG 129183 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| || || |||||||||||| |||||| | | |||||||| Sbjct 129182 CAGAGGTTGATTTTTGCGGGAAAACAGCTCGAAGATGGCAGAACCCTGGCTGATTATAAC 129123 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || |||||| | || ||||| | ||||| Sbjct 129122 ATCCAGAAAGAGTCAACTCTTCACCTTGTGTT 129091 >seq933 Length=173040 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | |||||||| || || ||||| || || || ||| Sbjct 29925 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACATTGGAGGTTGAGAGTTCC 29984 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| ||||| || |||||||| || || |||||||| || Sbjct 29985 GATACAATTGACAATGTGAAGGCAAAAATTCAGGATAAAGAGGGTATTCCTCCAGACCAG 30044 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| |||||| |||||| | |||||| | ||| | | ||||||||| Sbjct 30045 CAGAGGCTAATTTTTGCCGGGAAGCAGTTGGAAGATGGTCGTACTCTGGCTGATTATAAT 30104 Query 156003 AT 156004 || Sbjct 30105 AT 30106 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || | ||||| || |||||||| || || || ||| ||| Sbjct 30153 ATGCAAATATTTGTGAAGACCCTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCT 30212 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || |||||| || || |||||||| || || || || ||||| || Sbjct 30213 GATACAATCGATAATGTGAAAGCAAAGATTCAAGATAAGGAGGGTATTCCCCCAGACCAG 30272 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| ||||||||||||| | || ||| | ||||| ||||||| ||| Sbjct 30273 CAGAGGCTTATTTTTGCCGGTAAGCAGTTGGAGGATGGTCGTACTTTGGCAGATTACAAT 30332 Query 156003 AT 156004 || Sbjct 30333 AT 30334 Score = 96.9 bits (106), Expect = 5e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||||||||| ||||| || || | || || || |||| Sbjct 29013 ATGCAAATTTTCGTGAAAACATTGACTGGCAAAACCATCACCCTTGAGGTGGAGAGTTCT 29072 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| ||| ||| || ||||| || ||||| || || ||||| || Sbjct 29073 GATACCATAGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAG 29132 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | || | ||| ||||| || | |||||| | | || | | ||||| | Sbjct 29133 CAAAGGCTTATCTTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACA-- 29190 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 | ||||||| ||| | || ||||| | ||| | | ||||| ||||| Sbjct 29191 ACATCCAAAAGGAGTCCACCCTTCACCTTGTGCTGCGGTTAAGGGGCGG 29239 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| |||| || |||||||||||||| || || | || || ||| || Sbjct 29241 ATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCC 29300 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || || || || || ||||| ||||| ||||| || || Sbjct 29301 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 29360 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || ||||| || || ||| ||||| || | ||||| || Sbjct 29361 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 29420 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || || | || |||||||| ||| | ||||| ||||| || Sbjct 29421 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGG 29467 >seq23 Length=202804 Score = 102 bits (112), Expect = 1e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| | || |||||||| || ||| | ||||||||| || Sbjct 5488 ATGCAAATCTTCGTCAAAACCCTAACCGGAAAAACCATCACACTCGAAGTCGAATCATCA 5547 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||| || || |||||||| ||||| || || || || || Sbjct 5548 GACACAATCGACAACGTGAAGGCGAAGATTCAAGATAAGGAAGGGATTCCACCTGATCAG 5607 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||| | ||| ||||| ||||| || ||| || ||| | | ||||||||| Sbjct 5608 CAACGATTGATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTTGCTGATTATAAT 5667 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || ||||| | || |||||| Sbjct 5668 ATTCAGAAAGAATCTACACTTCAT 5691 >seq1642 Length=65368 Score = 100 bits (110), Expect = 4e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || | || || || |||||||| || || || || || Sbjct 33767 ATGCAGATTTTCGTGAAGACTCTTACCGGGAAGACTATTACCTTGGAGGTAGAGAGCTCA 33826 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || || || || ||||| || |||||||| || || ||||| || Sbjct 33827 GACACTATTGACAATGTAAAGGCCAAGATACAGGACAAAGAAGGTATCCCCCCAGACCAG 33886 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || |||||||| |||||| | | ||||| | |||||||| Sbjct 33887 CAAAGATTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTATAAC 33946 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 33947 ATTCAGAAAGAGTCCACCCTTCA 33969 Score = 100 bits (110), Expect = 4e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || | |||||||| || || || | || || || |||| Sbjct 54162 ATGCAGATCTTTGTTAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGTTCT 54221 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || || || |||||||||||||| || || ||||| || Sbjct 54222 GACACCATAGACAATGTCAAGGCCAAGATTCAAGATAAAGAAGGTATTCCCCCAGATCAG 54281 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || || |||| ||| || ||||||||||||||| |||||| | | |||||||| Sbjct 54282 CAGAGGTTAATTTTTGCAGGAAAGCAGCTCGAAGATGGCAGAACCCTGGCTGATTATAAC 54341 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || ||||| Sbjct 54342 ATCCAGAAAGAGTCTACCCTTCA 54364 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||||||||| || ||||| ||||| || ||| ||| Sbjct 33995 ATGCAAATCTTTGTGAAGACGTTGACTGGAAAGACCATTACCTTAGAGGTAGAAAGTTCA 34054 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || ||||| |||||||| || || || || || || ||||| ||| Sbjct 34055 GACACCATAGATAATGTGAAGGCAAAAATACAGGACAAGGAGGGAATCCCGCCAGATCAA 34114 Query 155943 CAAAGATTGATTTATGCCGGTAAGCA 155968 || || ||||| | ||| || ||||| Sbjct 34115 CAGAGGTTGATCTTTGCTGGGAAGCA 34140 >seq1740 Length=56962 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 || || ||||| ||||| || || || ||||| || ||||| ||||||| ||| || ||| Sbjct 21749 AAGATTCAAGACAAAGAGGGAATCCCACCAGACCAGCAAAGGTTGATTTTTGCTGGAAAG 21808 Query 155967 CAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCAT 156026 |||||||||||| ||| || ||| | ||||| || || ||||| | || |||||| Sbjct 21809 CAGCTCGAAGATGGCAGGACCTTAGCTGATTACAACATCCAGAAAGAATCCACCCTTCAT 21868 Query 156027 TTAGTGTT 156034 | || || Sbjct 21869 CTTGTCTT 21876 Score = 86.0 bits (94), Expect = 9e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||||||||| || ||||| ||||| || ||| ||| Sbjct 42313 ATGCAAATCTTTGTGAAGACCTTGACTGGAAAGACCATTACCTTAGAGGTAGAAAGTTCA 42254 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || |||||||| || || || || || || ||||| || Sbjct 42253 GACACAATTGATAATGTCAAGGCCAAAATACAGGACAAGGAGGGAATCCCACCAGATCAG 42194 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || ||||| | || ||| || ||| | | || || || Sbjct 42193 CAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCTGACTACAAC 42134 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || ||| | || |||||| | || || Sbjct 42133 ATTCAGAAGGAGTCTACTCTTCATCTTGTTTT 42102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731621114278400