Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq2319 410 1e-109 seq432 316 2e-81 seq1296 159 4e-34 seq200 138 1e-27 seq318 114 1e-20 seq134 113 5e-20 seq1868 102 9e-17 seq145 98.7 1e-15 seq26 91.5 2e-13 seq78 82.4 8e-11 >seq2319 Length=57875 Score = 410 bits (454), Expect = 1e-109 Identities = 449/594 (76%), Gaps = 2/594 (0%) Strand=Plus/Minus Query 157979 CCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCC 158038 ||||| || || || |||| || ||| | |||| || | ||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 158039 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 158098 |||| ||||||||| || |||||||||||||| |||| ||| ||||||| || || || Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 158099 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCT 158158 || || || |||||||| ||||| || ||| | ||||| ||||| |||||||| || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 158159 CTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGA 158217 || ||| |||||||||||| | || ||||| | | | || | ||||| || || Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACTACAGA 18344 Query 158218 AACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGT 158277 || || || ||| | ||||||| ||||||||||||||||| |||||||| || || Sbjct 18343 AAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGT 18284 Query 158278 CGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCG 158337 || || ||||| || || || || |||||||||||||||||| ||||||||||| || Sbjct 18283 AGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCG 18224 Query 158338 TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGG 158397 ||| || || |||||||| ||||| |||||||| || || |||||||| ||||| | || Sbjct 18223 TTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGG 18164 Query 158398 CGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGG 158457 || || ||||| ||||| | || || || || || ||||| ||| || ||||| Sbjct 18163 TATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTC 18104 Query 158458 TCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGA 158517 ||| |||||||| | ||||||||||| ||| | | ||||| ||| ||||||||||| Sbjct 18103 TCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 18044 Query 158518 AGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 158571 |||||||||||| |||||||| || || ||||| || ||||| ||||| | ||| Sbjct 18043 AGTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq432 Length=331984 Score = 316 bits (350), Expect = 2e-81 Identities = 392/534 (73%), Gaps = 2/534 (0%) Strand=Plus/Plus Query 159510 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAA 159569 |||||| | | |||| ||||||||||| | ||||| |||| || ||||| ||| Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 159570 CTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATTGGTTTCATG 159629 | || || | |||| |||||| || || |||||||| |||| |||| ||||| ||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 159630 CTCCGTCAGTTTGAACTGGCACG-TCTCATTGGTATCCGTCCTTACAATGCTATTGCGTT 159688 | ||||| |||||||| || || ||| | | | || ||||| ||||| || || || Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGCAATCGCATT 47668 Query 159689 CTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCCAG 159748 ||| ||||| |||||||||||||| || ||||| || || ||| |||||||||| | Sbjct 47669 CTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGG 47728 Query 159749 TTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCA 159808 |||||| || || || ||||| || ||||| || ||| ||||| | | || | || Sbjct 47729 TTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCA 47788 Query 159809 AGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTAGG 159868 ||| ||||| || ||||| ||||| || || ||||||||||||||||||||| || | || Sbjct 47789 AGGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGG 47848 Query 159869 TGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGG 159928 | || ||| | | || || ||||||| ||| ||||| || || | | ||||||||| Sbjct 47849 CGCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGG 47908 Query 159929 AGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTAT 159988 || |||||||| || || ||| | |||| |||| ||| || ||||| || || Sbjct 47909 GGATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAAT 47968 Query 159989 GGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAA 160042 |||||| || |||||||| ||||| || ||||| || |||| ||||| || || Sbjct 47969 GGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq1296 Length=110557 Score = 159 bits (176), Expect = 4e-34 Identities = 180/239 (75%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 158033 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 158092 || || |||| ||||||||| || |||||||||||||| |||| ||| ||||||| || Sbjct 75580 TTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAG 75521 Query 158093 GCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 158152 || || || || || |||||||| ||||| || ||| | ||||| ||||| |||||||| Sbjct 75520 GCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 75461 Query 158153 GGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAAC 158211 || || || ||| |||||||||||| | || |||| || | | || | ||||| Sbjct 75460 GGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAAC 75402 Query 158212 GACTGAAACAGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATA 158270 || |||| || || ||| | ||||||| ||||||||||||||||| |||| || Sbjct 75401 TACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTNTA 75343 >seq200 Length=959787 Score = 138 bits (152), Expect = 1e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 160062 ATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCT 160121 ||||| ||||| || || | ||| | |||| || |||| | | || || || Sbjct 265389 ATGTTATTTGTCCCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCC 265330 Query 160122 CTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAA 160181 || || || ||||| || || ||||| |||||| ||| | ||||| |||||||| ||| Sbjct 265329 CTGAACCTACGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 265270 Query 160182 TTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCA 160241 |||||||| |||||||||||||| || || || |||||||| | ||||| ||| |||| Sbjct 265269 TTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCG 265210 Query 160242 CCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGT 160285 || ||||| || ||||||||| |||| ||||| || || || Sbjct 265209 GCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGT 265166 >seq318 Length=400206 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 158349 TCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGA 158408 ||||| | ||||| || ||||| || || |||||||| | || | || || || Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTACTG 349152 Query 158409 TGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTG 158468 |||| ||||| | || | || || || ||||| ||| || ||||| ||| ||||||| Sbjct 349153 TGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTG 349212 Query 158469 TGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATG 158528 | | ||||| ||||| ||| | ||||| ||| ||||||||||||||||||||| Sbjct 349213 TAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATA 349272 Query 158529 AGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 158571 | |||||| | || || || || | || || ||||| | ||| Sbjct 349273 AACGTAACACTCATAATTTTCCTCCAGAGCTAGCTGCGGTTGA 349315 >seq134 Length=619377 Score = 113 bits (124), Expect = 5e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 158750 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 158809 ||||| |||| |||||||| | ||||||||||| || || || || ||||| ||| Sbjct 606834 TACATCTTAGATGCAGCAGAGAATGCAGGAGTTGAACTTCCATATTCGTGCCGTGCCGGT 606775 Query 158810 GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG 158869 || |||||| | ||||| || || |||| ||||| |||| |||||| |||| || Sbjct 606774 GCATGCTCTACCTGTGCTGGGAAGGTTGTTTCTGGTTCTGTGGATCAGTCTGATGGTTCA 606715 Query 158870 TTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACA 158929 || | || || | ||| || | | ||| | ||| || || ||||| || |||||||| Sbjct 606714 TTTCTTGATGACGGTCAAATGGAGGAAGGCTATGTGCTAACCTGTGTGGCGTATCCAACT 606655 Query 158930 TCTGATTGTGTTGTT 158944 || ||||||||| || Sbjct 606654 TCAGATTGTGTTATT 606640 >seq1868 Length=44937 Score = 102 bits (112), Expect = 9e-17 Identities = 94/118 (80%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 159961 CAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 160020 |||| |||| ||| || ||||| || ||||||||||| |||||||| ||||| || |||| Sbjct 39537 CAACCCAAGCGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCT 39596 Query 160021 TCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGT 160078 | || |||| ||||| || || || ||| | |||||||| ||||| ||||| || || Sbjct 39597 T-GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGT 39653 >seq145 Length=649883 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 5/169 (3%) Strand=Plus/Minus Query 157907 TACATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 157966 |||||||| ||| |||||||||| | ||||| ||||||||||| ||||| ||| Sbjct 132355 TACATGGGTCGTAAGTGGGAACTAAGTTTTCGTTTGGGTATGCGCCCTTGGATTGCTGTT 132296 Query 157967 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAA 158026 |||||||| |||||||| || | ||| | ||| | ||||||| | ||||| Sbjct 132295 GCATATTCAGCTCCAGTTACTACTGCA-----GTTTTTCTTAATCTATCCAATTGGTCAG 132241 Query 158027 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACT 158075 || || | |||| ||||||||| || |||||| ||||||| |||| Sbjct 132240 GGAAGCTTTTTAGATGGTATGCCTCTGGGAATCTCTAGTACTTTCAACT 132192 >seq26 Length=132285 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 160166 AGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACT 160225 ||| |||||||| | ||||||||| |||||||||||||| || || || || ||||| | Sbjct 33083 AGCGGAAGATCCTGGATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTAT 33024 Query 160226 ACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGT 160285 ||||| ||| ||| || |||| || ||||||||| |||| ||||| || || || Sbjct 33023 TCGTGCGTGGACGGCGGCTCAAGATCTGCCTCATGAAAACCTTATGTTCCCTGAGGAGGT 32964 >seq78 Length=963227 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 158744 GATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGT 158803 ||||| |||||||| || | |||||||||| ||| |||| || |||||| || | Sbjct 249469 GATCAGTACATTCTTGATGTAGCAGAAGAACAAGGCATTGACCTTCCTTACTCATGCAGG 249528 Query 158804 GCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGT 158838 ||||||||||| ||||||||||| || ||| |||| Sbjct 249529 GCTGGTGCTTGTTCTTCATGTGCTGGAAAAGTTGT 249563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548186417255680