Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq2319 349 4e-91 seq432 149 7e-31 seq1296 140 4e-28 seq219 87.8 2e-12 >seq2319 Length=57875 Score = 349 bits (386), Expect = 4e-91 Identities = 421/570 (74%), Gaps = 6/570 (1%) Strand=Plus/Minus Query 72651 TGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGG 72710 |||||| ||| | | || ||| | |||||||| || || ||||||||||| ||||| Sbjct 18565 TGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGG 18506 Query 72711 TATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCA 72770 ||||| ||||| |||||||| ||| | || || || || || || || || || ||||| Sbjct 18505 AATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCA 18446 Query 72771 CCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCA 72830 || || || ||| ||||||||| ||| | ||||| || || |||||||| ||||| Sbjct 18445 TCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCA 18386 Query 72831 CGGTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTA 72890 |||||| | || ||||| | | ||||| || || ||||| || || | || | Sbjct 18385 CGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGA 18326 Query 72891 CGGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTT 72950 || || | ||||| ||||| |||||||| ||||| ||||| ||||||||||| || || Sbjct 18325 AGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTT 18266 Query 72951 CGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCT 73010 || |||| |||||||| || || ||||||||||||||||| ||||| |||||||| Sbjct 18265 TGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGTTCTTTACATTTCTTCCT 18206 Query 73011 CGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATT 73070 |||| | |||||||| || | ||||| ||| | | |||||| |||| ||||| || Sbjct 18205 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGTATCAGTACTATGGCTTT 18146 Query 73071 CAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGT-AC 73129 ||| | || ||||| || || |||||||| || || ||| | | || ||| | Sbjct 18145 CAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGG---TCGTGTAAT 18089 Query 73130 CAACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAG 73187 |||| |||| ||| || ||||| | || |||||||| |||||||||||||||||| | Sbjct 18088 TAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACG 18029 Query 73188 AAATGCACACAACTTCCCACTAGACCTAGC 73217 || || || || ||||| ||||||||||| Sbjct 18028 TAACGCTCATAATTTCCCTCTAGACCTAGC 17999 >seq432 Length=331984 Score = 149 bits (164), Expect = 7e-31 Identities = 277/407 (68%), Gaps = 0/407 (0%) Strand=Plus/Plus Query 73589 TTGTTCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGA 73648 ||||| || ||||| || || ||||| |||||| || || |||| |||||||||||| Sbjct 47499 TTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAATTAGGTGGT 47558 Query 73649 CTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAG 73708 || |||| ||||| || | || || | || ||| | |||||||| ||| | | || Sbjct 47559 CTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATGTTACGTCAA 47618 Query 73709 TTTGAGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTT 73768 ||||| |||| || |||| | || ||||| || ||| | || || || | Sbjct 47619 TTTGAACTTGCTCGATCTGTTCAATTGCGGCCTTATAATGCAATCGCATTCTCCGGTCCA 47678 Query 73769 ATCGCAGTATTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTC 73828 || || || || | || || || ||||| | || ||| | |||||||||| Sbjct 47679 ATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTGGTTCTTT 47738 Query 73829 GCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCAC 73888 |||||| || ||||| ||||| || ||||| | ||| | || | || || || || Sbjct 47739 GCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCAAGGGTTTCAT 47798 Query 73889 AATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTA 73948 ||| || | || ||||||||||||||||| || || ||| || | || | || || Sbjct 47799 AATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCCCTA 47858 Query 73949 CTATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGA 73995 |||| || || ||||| || || ||| | || || || | |||||| Sbjct 47859 TTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGA 47905 >seq1296 Length=110557 Score = 140 bits (154), Expect = 4e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 72687 ATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCA 72746 ||| || ||||||||||| ||||| ||||| ||||| |||||||| ||| | || || || Sbjct 75581 ATTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCA 75522 Query 72747 AGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGG 72806 || || || || || || ||||| || || || ||| ||||||||| ||| | ||||| Sbjct 75521 GGCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGG 75462 Query 72807 TGGTAGTCTCTTCAGTGCAATGCACGGTTCACTTGTTACTTCATCTCTAATCAGAGAGAC 72866 || || |||||||| ||||||||||| | || ||||| | | ||||| || || Sbjct 75461 CGGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAAC 75402 Query 72867 AACAGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATA 72925 ||||| || || | || | || || | ||||| ||||| |||||||| | || Sbjct 75401 TACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTNTA 75343 >seq219 Length=535087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 72275 TTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTT-CTAACTGCTGCTGCTTGTTTCATT 72333 |||| ||||||||||| || |||||||| | ||| | || || || || || ||| Sbjct 252282 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATT 252224 Query 72334 GTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGT 72393 | || ||||| ||||| ||||| || ||||| || || || | || || ||| | || Sbjct 252223 ATCGCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGA 252164 Query 72394 TCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATA 72453 ||| | | || || ||||| || || || ||||| | |||| |||| || || Sbjct 252163 TCTCTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGCGGCTATT 252104 Query 72454 GGATTACACTTCTATCCCATCTGGGAAGCAGC 72485 || || ||||| || || || |||||||| || Sbjct 252103 GGTTTGCACTTTTACCCGATATGGGAAGCTGC 252072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572677218929920