Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1210 143 3e-28 seq520 129 7e-24 seq140 87.8 2e-11 >seq1210 Length=122563 Score = 143 bits (158), Expect = 3e-28 Identities = 213/296 (72%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || || || |||||||| ||||||||||| ||||| || || | | |||||| ||||| Sbjct 42536 GAATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGCGCCTCTGAGACTTGA 42477 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||| | || || || ||||| |||||||||||| ||||| || Sbjct 42476 ACTTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGAAGCGGCAAAG 42417 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTG--GA 869810 || || || ||||| |||||||||||| ||| ||||| | || |||||| || Sbjct 42416 AAGGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTTCCAGTGATGA 42357 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | | | || | | || || || ||||||||||||| || || ||||| ||||||| Sbjct 42356 AGATCT-TCCGAT-AAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTTTTGT 42299 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTT 869925 |||| ||||| | || |||| | || ||||| | ||| || |||| ||||| Sbjct 42298 ACATTTCCCAGATTTTAGGGTATTGAATTGGGAACA-TACAGAAACGGTCAGGGTT 42244 >seq520 Length=294854 Score = 129 bits (142), Expect = 7e-24 Identities = 209/296 (71%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 || || ||||| || || ||||||||||| ||||||||||| | |||| | ||||| Sbjct 262393 GAATGAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTTGA 262452 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || |||||||| | ||||| || ||||| || || |||||| |||||| || Sbjct 262453 ACTTCTTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCAAAG 262512 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT--GGA 869810 ||||| || ||||| ||| ||||| || ||| ||||| | || ||||| ||| Sbjct 262513 AAAGCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGAGGA 262572 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | | | | ||| || || || || || ||||||| || || ||||| ||||||| Sbjct 262573 AGATCTTG--TGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTGT 262630 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTT 869925 |||| ||||| | || |||| | || ||||| | ||| || |||| ||||| Sbjct 262631 ACATTTCCCAAATTTTAGGGTATTGAATCGGGAACA-TACAGAAACGGTCAGGGTT 262685 >seq140 Length=664520 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || || ||| | |||||||| |||||| |||||| ||| || | || || || Sbjct 299087 GCTGCTAATTACTTGAACATCAAGAGTCTGCTTGATCTTACCTGCCAGACAGTAGCTGAC 299146 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || ||||| ||||| |||||||||||||| ||| Sbjct 299147 ATGATCAAGGGAAAGACACCGGAGGAAATCCGTAAGACCTTTAACATTAAG 299197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104888658133408