Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq322 109 5e-19 seq23 102 7e-17 seq933 100 2e-16 seq1642 91.5 1e-13 seq1740 89.7 4e-13 seq1436 82.4 6e-11 >seq322 Length=397916 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| ||||| || ||||| || || ||||| ||||| | || ||| | Sbjct 312302 AATGCAAATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTGGAGGTTGAGAGTTC 312243 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| ||| | || ||| |||||| || ||||| || | || ||||| Sbjct 312242 AGATACTATCGATAATGTGAAAGCTAAGATTCAGGATAAAGAGGGAATCCCTCCAGATCA 312183 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||| | ||| || |||||||| ||||||| ||||| | || |||||||| Sbjct 312182 GCAGAGGCTTATCTTTGCAGGGAAACAGCTTGAGGATGGAAGAACCCTAGCTGATTACAA 312123 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || |||||||| | || |||| | ||| || |||| |||| Sbjct 312122 CATACAGAAGGAATCTACCCTTCATTTGGTACTTAGATTGAGAGGTGGAA 312073 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||| || |||||||| || || || ||||| | || ||| | Sbjct 312530 AATGCAGATTTTTGTGAAGACTTTAACAGGAAAGACTATTACTTTAGAGGTTGAGAGTTC 312471 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| ||| | || ||| |||||| || || ||||| | || ||||| Sbjct 312470 AGATACTATCGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCAGATCA 312411 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||| | ||| || ||||| || ||||||| ||||| | || |||||||| Sbjct 312410 GCAGAGGCTTATCTTTGCAGGGAAACAACTTGAGGATGGAAGAACCCTAGCAGATTACAA 312351 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || |||||||| | || ||||| | ||| || |||| |||| Sbjct 312350 CATACAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAA 312301 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| || ||||| |||||||| ||| | || |||| | Sbjct 312985 ATGCAAATTTTCGTGAAAACATTGACCGGTAAAACCATCACCCTTGAGGTGGAGATTTCT 312926 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| ||||| ||||| ||||| | || ||||| Sbjct 312925 GATACCATAGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCTGATCAG 312866 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||| | ||| |||||||| | || |||| | | || | |||||||||||| Sbjct 312865 CAAAGGCTTATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACCCTTGCGGATTACAAC 312806 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||| || || || | ||| | ||| Sbjct 312805 ATCCAAAAGGAGTCCACCCTTCACCTTGTG 312776 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||| || || || || || || |||||||| ||| | || || | | Sbjct 312757 ATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCC 312698 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || ||||| |||||||| ||| | || ||||| Sbjct 312697 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 312638 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| || || || || ||||||| ||||| | || ||||||||| Sbjct 312637 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 312578 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || || |||||||| | || ||||| | ||| || |||| |||| Sbjct 312577 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAA 312529 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| || | || |||||||| ||| | || ||||| | Sbjct 334094 ATGCAAATTTTCGTGAAAACATTGATGGGTAAAACCATCACCCTTGAGGCGGAGAGTTCT 334035 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| ||||| ||||| ||||| | || ||||| Sbjct 334034 GATACCATAGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCTGATCAG 333975 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||| | || |||||||| | || |||| | | || | || ||||||||| Sbjct 333974 CAAAGGCTTATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCCTTGCAGATTACAAC 333915 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || ||||| || || || | ||| | ||||| Sbjct 333914 ATCCAAAAGGAGTCCACCCTTCACCTTGTGTT 333883 >seq23 Length=202804 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 |||||||| || |||||||| ||||||| |||||||| || ||||| || | | | | Sbjct 5488 ATGCAAATCTTCGTCAAAACCCTAACCGGAAAAACCATCACACTCGAAGTCGAATCATCA 5547 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | | || || ||||||| || || ||||| | || ||||| Sbjct 5548 -GACACAATCGACAACGTGAAGGCGAAGATTCAAGATAAGGAAGGGATTCCACCTGATCA 5606 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || | || | ||| ||||||||||| ||||||| || || | || ||||| || Sbjct 5607 GCAACGATTGATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTTGCTGATTATAA 5666 Query 110452 CATTCAAAAAGAATCTAC 110469 ||||| ||||||||||| Sbjct 5667 TATTCAGAAAGAATCTAC 5684 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| |||||||||||||||| ||| | || || | | Sbjct 5260 ATGCAAATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCC 5319 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || ||| || ||| ||||| ||||| | || |||||| Sbjct 5320 GACACCATCGACAACGTCAAAGCCAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAA 5379 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || || | || || ||||| || || |||| | | || | || ||||||||| Sbjct 5380 CAACGTCTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTGCCGATTACAAC 5439 Query 110453 ATTCAAAAAGAATCTACG 110470 || ||||||||||| ||| Sbjct 5440 ATCCAAAAAGAATCCACG 5457 >seq933 Length=173040 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| || || ||||||||||| ||| | || |||| | Sbjct 29013 ATGCAAATTTTCGTGAAAACATTGACTGGCAAAACCATCACCCTTGAGGTGGAGAGTTCT 29072 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || ||| ||||| ||||| ||||| | || ||||| Sbjct 29073 GATACCATAGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAG 29132 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||| | ||| |||||||| |||| |||| | | || | |||||||||||| Sbjct 29133 CAAAGGCTTATCTTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACAAC 29192 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || ||||| || || || | ||| | ||| Sbjct 29193 ATCCAAAAGGAGTCCACCCTTCACCTTGTG 29222 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||| || |||||||| || || || ||||| | || ||| | Sbjct 29468 AATGCAGATTTTTGTGAAGACTTTAACAGGGAAGACTATTACTTTAGAGGTTGAGAGTTC 29527 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || ||| |||||| || || ||||| | || ||||| Sbjct 29528 AGATACTATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAAGGTATCCCTCCCGATCA 29587 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || ||||| | ||| || || || || ||||||| ||||| | || |||||||| Sbjct 29588 GCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAA 29647 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || |||||||| | || ||||| | ||| || |||| |||| Sbjct 29648 CATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAA 29697 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| ||||| || || || || || || |||||||| ||| | || || | | Sbjct 29241 ATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCC 29300 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || || ||||| |||||||| ||| | || ||||| Sbjct 29301 GATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCAG 29360 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| || || || || ||||||| ||||| | || ||||||||| Sbjct 29361 CAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAAC 29420 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || || |||||||| | || ||||| | ||| || |||| |||| Sbjct 29421 ATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAA 29469 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-CT 110329 |||||||||||||| || || | || || || || |||||| | || ||| || || Sbjct 30153 ATGCAAATATTTGTGAAGACCCTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCT 30212 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || ||| ||| | || ||| |||||| || || || || | ||| || Sbjct 30213 GA---TACAATCGATAATGTGAAAGCAAAGATTCAAGATAAGGAGGGTATTCCCCCAGAC 30269 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || ||||||| ||| ||||| ||| ||||||||| | || |||| |||||| Sbjct 30270 CAGCAGAGGCTTATTTTTGCCGGTAAGCAGTTGGAGGATGGTCGTACTTTGGCAGATTAC 30329 Query 110450 AACATTCAAAAAGAATCTAC 110469 || ||||| ||||||||||| Sbjct 30330 AATATTCAGAAAGAATCTAC 30349 >seq1642 Length=65368 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || || || | || ||||| ||||| || ||||| ||| | Sbjct 53934 ATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCA 53993 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || |||||| |||||||||||| | || || ||| Sbjct 53994 GATACCATAGACAATGTTAAGGCCAAGATTCAGGACAAAGAAGGCATTCCACCAGACCAA 54053 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || |||||||| ||||||| | || | || ||||||||| Sbjct 54054 CAGAGGCTCATCTTTGCTGGAAAACAGCTTGAGGATGGTCGGACTTTAGCTGATTACAAC 54113 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| ||||| ||||| | || ||||| Sbjct 54114 ATTCAGAAAGAGTCTACCCTCCATTTGGTG 54143 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| || || || || ||| | ||||| || || |||||| | || ||| || | Sbjct 33767 ATGCAGATTTTCGTGAAGACTCTTACCGGGAAGACTATTACCTTGGAGGTAGAGAGCTCA 33826 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| | | | | ||||| ||||| ||||||||||| | ||| || || Sbjct 33827 -GACACTATTGACAATGTAAAGGCCAAGATACAGGACAAAGAAGGTATCCCCCCAGACCA 33885 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||| | |||| ||| || || |||||||| |||| | | || |||| ||||| || Sbjct 33886 GCAAAGATTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTATAA 33945 Query 110452 CATTCAAAAAGAATCTAC 110469 |||||| ||||| || || Sbjct 33946 CATTCAGAAAGAGTCCAC 33963 >seq1740 Length=56962 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || || || || ||||||||||| | || ||| | Sbjct 42997 ATGCAGATTTTTGTAAAGACATTGACAGGGAAAACCATTACTTTGGAGGTTGAGAGTTCA 42938 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | |||||| ||||| ||||| || ||| | || ||| || Sbjct 42937 GACACGATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 42878 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| | |||| ||| || || ||||| || |||| | ||||| |||| ||||||||| Sbjct 42877 CAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACATTGGCTGATTACAAC 42818 Query 110453 ATTCAAAAAGAATCTAC 110469 || || || |||||||| Sbjct 42817 ATCCAGAAGGAATCTAC 42801 >seq1436 Length=88924 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||||||||| |||| || |||||||| || ||||| || | | Sbjct 38991 ATGCAAATCTTTGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCC 38932 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||||| || |||||||| | || ||||| Sbjct 38931 GACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCTGATCAG 38872 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | ||| || || || |||| |||| ||||| | |||||||| || Sbjct 38871 CAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAAT 38812 Query 110453 ATTCAAAAAGAATCTACG 110470 || || ||||| || ||| Sbjct 38811 ATCCAGAAAGAGTCCACG 38794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412703615952032