Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq520 98.7 2e-14 >seq520 Length=294854 Score = 98.7 bits (108), Expect = 2e-14 Identities = 162/234 (69%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | ||||| || || |||||||| | ||||| || ||||| || || ||| Sbjct 262438 GCCTCAGAGACTTGAACTTCTTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCG 262497 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| |||||| || || || || ||||| ||| |||||||| ||| ||||| | || Sbjct 262498 TCGGAGGCGGCAAAGAAAGCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGG 262557 Query 796270 GAGACCCAGTG-----GACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGG 796324 | |||||| || | ||| | || ||||| || || || ||||| || | Sbjct 262558 TTGTTCCAGTGAGGAAGATCTTGTGAG-----AGATCGACTTCTTCTGCTGTCCAGAATG 262612 Query 796325 AGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 | || ||||| ||||||||||| ||||| || |||| | || ||||||| Sbjct 262613 AAGCTTCGGCTTTTTTGTACATTTCCCAAATTTTAGGGTATTGAATCGGGAACA 262666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913329184039136