Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq322 116 6e-21 seq933 96.9 5e-15 seq23 96.9 5e-15 seq1436 89.7 8e-13 seq1642 87.8 3e-12 seq1740 84.2 3e-11 >seq322 Length=397916 Score = 116 bits (128), Expect = 6e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || ||||||||||| |||||| | || || || | | Sbjct 312072 TGCAAATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTAGAGGTTGAGAGTTCAG 312013 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| ||| ||| || || ||| || || || || || ||||| | Sbjct 312012 ATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAGGGTATCCCTCCAGATCAGC 311953 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || ||||| ||||| ||| | || ||| ||||| | | |||||||| | Sbjct 311952 AGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGATGGAAGAACCCTTGCTGATTATAACA 311893 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| ||||| ||| ||||||| || || || Sbjct 311892 TCCAAAAGGAATCCACTCTCCATTTGGTTTTGCG 311859 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || ||||||||||| |||||| | || || || | | Sbjct 312300 TGCAAATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTGGAGGTTGAGAGTTCAG 312241 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| | ||||| ||| ||| || || |||||| || || || || ||||| | Sbjct 312240 ATACTATCGATAATGTGAAAGCTAAGATTCAGGATAAAGAGGGAATCCCTCCAGATCAGC 312181 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || |||||||| ||||| | || ||| ||||| || | ||||| || | Sbjct 312180 AGAGGCTTATCTTTGCAGGGAAACAGCTTGAGGATGGAAGAACCCTAGCTGATTACAACA 312121 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 |||| || ||||| || | ||||| ||| | |||| ||||| || Sbjct 312120 TACAGAAGGAATCTACCCTTCATTTGGTACTTAGATTGAGAGGTGG 312075 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || ||||||||||| || |||||| | || || || | | Sbjct 312528 TGCAGATTTTTGTGAAGACTTTAACAGGAAAGACTATTACTTTAGAGGTTGAGAGTTCAG 312469 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| | ||||| ||| ||| || || ||| ||||| || || || ||||| | Sbjct 312468 ATACTATCGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCAGATCAGC 312409 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || |||||||| |||||| | || ||| ||||| || ||||||| || | Sbjct 312408 AGAGGCTTATCTTTGCAGGGAAACAACTTGAGGATGGAAGAACCCTAGCAGATTACAACA 312349 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 |||| || ||||| || | ||||| || | |||| ||||| || Sbjct 312348 TACAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGG 312303 Score = 105 bits (116), Expect = 1e-17 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | |||||||| || || ||||| || || |||| || || | | Sbjct 312984 TGCAAATTTTCGTGAAAACATTGACCGGTAAAACCATCACCCTTGAGGTGGAGATTTCTG 312925 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| ||| ||| || ||| || ||||| |||||||| ||||| | Sbjct 312924 ATACCATAGACAATGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCTGATCAGC 312865 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || || ||||| |||||||||||||| ||| | || | | ||||| || | Sbjct 312864 AAAGGCTTATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACCCTTGCGGATTACAACA 312805 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| || || || Sbjct 312804 TCCAAAAGGAGTCCAC 312789 Score = 105 bits (116), Expect = 1e-17 Identities = 153/215 (71%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAAC-AATTACTATTGATGTAGAACATAAC 146090 |||| || || | || || ||||||||||| || | ||||| | || || || | Sbjct 333637 TGCAGATTTTTGTCAAGACTTTAACAGGAAAGACTATTTACTTTAGAGGTTGAGAGTTCA 333578 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 |||||||| | ||||| ||| ||| || || ||| || || || || || ||||| Sbjct 333577 GATACTATCGATAATGTGAAAGCTAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCAG 333518 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || || || |||||||| |||||| | || ||| ||||| | | |||||||| Sbjct 333517 CAGAGGCTTATCTTTGCAGGGAAACAACTTGAGGATGGAAGAACCCTTGCTGATTATAAC 333458 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 || ||||| ||||| ||| ||||||| || || || Sbjct 333457 ATCCAAAAGGAATCCACTCTCCATTTGGTTTTGCG 333423 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | |||||||| | || ||||| || || |||| | || | | Sbjct 334093 TGCAAATTTTCGTGAAAACATTGATGGGTAAAACCATCACCCTTGAGGCGGAGAGTTCTG 334034 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || ||| ||| || ||| || ||||| |||||||| ||||| | Sbjct 334033 ATACCATAGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCTGATCAGC 333974 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || || || || |||||||||||||| ||| | || | ||||||| || | Sbjct 333973 AAAGGCTTATCTTCGCCGGTAAACAATTAGAAGATGGCCGCACCCTTGCAGATTACAACA 333914 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| || || || | || | || || || |||||||| |||| Sbjct 333913 TCCAAAAGGAGTCCACCCTTCACCTTGTGTTGCGGTTAAGAGGTGGTA 333866 Score = 89.7 bits (98), Expect = 8e-13 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || ||||| || || ||| | || || || | || Sbjct 333408 TGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACTTTGGAGGTTGAGAGTTTCG 333349 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| ||| ||||| || |||||| || ||||| | || || | Sbjct 333348 ATACTATTGACAATGTGAAAGCAAAAATTCAGGATAAAGAGGGTATTCCTCTGGACCAGC 333289 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || || || || || ||| | | || | | |||||||||| Sbjct 333288 AGAGGCTAATTTTTGCCGGCAAGCAGTTGGAAGATGGTTGTACTCTGGCTGATTATAATA 333229 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | || || ||||| ||| |||| Sbjct 333228 TCCAGAAGGAATCTACTCTCCA 333207 >seq933 Length=173040 Score = 96.9 bits (106), Expect = 5e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | |||||||| || || ||||| || || |||| || || | | Sbjct 29014 TGCAAATTTTCGTGAAAACATTGACTGGCAAAACCATCACCCTTGAGGTGGAGAGTTCTG 29073 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || ||| ||| || ||| || ||||| |||||||| ||||| | Sbjct 29074 ATACCATAGACAACGTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAGC 29133 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || || ||||| ||||||||||| || ||| | || | | ||||| || | Sbjct 29134 AAAGGCTTATCTTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACAACA 29193 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| || || || Sbjct 29194 TCCAAAAGGAGTCCAC 29209 >seq23 Length=202804 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| |||| || ||||| || || | || |||||| || Sbjct 5261 TGCAAATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCCG 5320 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || ||| ||||| ||| || ||||| |||||||| ||||||| Sbjct 5321 ACACCATCGACAACGTCAAAGCCAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAAC 5380 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| || || || |||||| | || ||| | || | | ||||| || | Sbjct 5381 AACGTCTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTGCCGATTACAACA 5440 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||||||||| || ||||| Sbjct 5441 TCCAAAAAGAATCCACGCTCCAT 5463 Score = 96.9 bits (106), Expect = 5e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | ||||| |||| |||||||| || || | || || ||| ||| | Sbjct 5489 TGCAAATCTTCGTCAAAACCCTAACCGGAAAAACCATCACACTCGAAGTCGAATCATCA- 5547 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | || || || || || ||| ||| ||||| |||||||| ||||| Sbjct 5548 GACACAATCGACAACGTGAAGGCGAAGATTCAAGATAAGGAAGGGATTCCACCTGATCAG 5607 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| || | || ||||| |||||||| | || ||| || || | | ||||||||| Sbjct 5608 CAACGATTGATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTTGCTGATTATAAT 5667 Query 146211 ATACAAAAAGAATCGAC 146227 || || |||||||| || Sbjct 5668 ATTCAGAAAGAATCTAC 5684 >seq1436 Length=88924 Score = 89.7 bits (98), Expect = 8e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || || || || || |||||| |||| || || | | Sbjct 38762 TGCAGATTTTTGTGAAGACGTTGACGGGGAAGACTATTACTCTTGAGGTGGAGAGTTCTG 38703 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| || || || ||| ||| || || |||||||| ||||| | Sbjct 38702 ATACTATTGATAATGTGAAGGCGAAGATTCAAGATAAGGAGGGGATTCCACCTGATCAGC 38643 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| |||||||| | || ||| || || | | |||||||||| Sbjct 38642 AGCGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGAAGGACTCTTGCTGATTATAATA 38583 Query 146212 TACAAAAAGAATCGACT 146228 | || |||||||| ||| Sbjct 38582 TTCAGAAAGAATCTACT 38566 Score = 87.8 bits (96), Expect = 3e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| |||| |||||||| || || | || || ||| | Sbjct 7263 TGCAAATCTTCGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCTG 7204 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || || || || || ||||||||| ||||| || ||||| | Sbjct 7203 ACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATTCCTCCTGATCAGC 7144 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || |||||||| || ||||| || ||| ||||| | | |||||||||| Sbjct 7143 AGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAATA 7084 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || ||||| || || | ||||| || Sbjct 7083 TCCAGAAAGAGTCTACGCTTCATTTGGT 7056 Score = 87.8 bits (96), Expect = 3e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| |||| |||||||| || || | || || ||| || Sbjct 38990 TGCAAATCTTTGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCCG 38931 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || || || || || ||||||||| || || || ||||| | Sbjct 38930 ACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCTGATCAGC 38871 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || |||||||| || ||||| || ||| ||||| | | |||||||||| Sbjct 38870 AGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAATA 38811 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || ||||| || || | |||||||| | || || | ||||| Sbjct 38810 TCCAGAAAGAGTCCACGCTTCATTTAGTGCTTCGGTTGCGTGGAGG 38765 >seq1642 Length=65368 Score = 87.8 bits (96), Expect = 3e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || || || || ||| | || || || | | Sbjct 53935 TGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCAG 53994 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| || || || || ||||||||||||||||| || |||| Sbjct 53995 ATACCATAGACAATGTTAAGGCCAAGATTCAGGACAAAGAAGGCATTCCACCAGACCAAC 54054 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||| ||||| || ||||| | || ||| | | || ||| | ||||| || | Sbjct 54055 AGAGGCTCATCTTTGCTGGAAAACAGCTTGAGGATGGTCGGACTTTAGCTGATTACAACA 54114 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || ||||| || || ||||||| || Sbjct 54115 TTCAGAAAGAGTCTACCCTCCATTTGGT 54142 >seq1740 Length=56962 Score = 84.2 bits (92), Expect = 3e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 ||||||| || | || ||||| ||||| ||||| ||||||||||| || || | | | Sbjct 42768 TGCAAATCTTTGTGAAGACATTGACAGGTAAAACCATTACTATTGAGGTGGAGAGCTCA- 42710 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | ||| | || ||| ||||| ||||| || || || || || || Sbjct 42709 GACACAATTGACAATCTGAAGGCTAAGATACAGGACAAAGAGGGTATCCCTCCAGACCAG 42650 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || ||||||||||| || || || | || ||| ||||| | |||||||| Sbjct 42649 CAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACTCTTGATGATTATAAC 42590 Query 146211 ATACAAAAAGAATCGACT 146228 || || ||||| || ||| Sbjct 42589 ATCCAGAAAGAGTCAACT 42572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785896902158080