Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq2319 354 1e-92 seq432 307 1e-78 seq1296 167 3e-36 seq177 143 3e-29 seq200 118 1e-21 seq134 114 2e-20 seq67 100 3e-16 seq78 96.9 4e-15 seq5156 95.1 1e-14 seq145 87.8 2e-12 seq96 84.2 3e-11 >seq2319 Length=57875 Score = 354 bits (392), Expect = 1e-92 Identities = 438/595 (74%), Gaps = 3/595 (1%) Strand=Plus/Minus Query 177957 CCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCATTCTC 178015 || |||||||| || | ||||| ||||| | |||| || | ||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGT-TTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTC 18524 Query 178016 CGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGA 178075 |||| ||||||||| || |||||||||||||| |||| ||| ||||||| || || || Sbjct 18523 AGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGA 18464 Query 178076 ACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATC 178135 || ||||| |||||||| ||||| |||||| | ||||| ||||| |||||||| || || Sbjct 18463 GCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTC 18404 Query 178136 TCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGA 178195 || ||| ||||||||| || | || |||||| | || | || || ||||| Sbjct 18403 CCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGA 18344 Query 178196 AACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGT 178255 || ||| || ||| | ||||||| ||||| ||||| |||||||| ||||| || || Sbjct 18343 AAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGT 18284 Query 178256 CGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCG 178315 || || |||||||| || || || |||||||||||||| || ||||||||||| || Sbjct 18283 AGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCG 18224 Query 178316 TTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGG 178375 ||| | || |||||||| || || ||||||||||| || |||||||| ||||| | || Sbjct 18223 TTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGG 18164 Query 178376 TGTATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGG 178435 | | || ||||| || || | |||||||| || || ||||| ||| || | || Sbjct 18163 TATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTC 18104 Query 178436 ACAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGA 178495 ||||| ||||| | ||||| ||||| || | | |||||||| || || ||||| Sbjct 18103 TCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 18044 Query 178496 AGTCATGCACGAAAGAAATAGCACATAACTTCCCGCTTGATCTTGCAGCAGCTGA 178550 ||| ||||| ||| | || || ||||| ||||| || || || || || | ||| Sbjct 18043 AGTTATGCATGAACGTAA-CGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq432 Length=331984 Score = 307 bits (340), Expect = 1e-78 Identities = 390/534 (73%), Gaps = 2/534 (0%) Strand=Plus/Plus Query 179155 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAA 179214 |||||| | | |||| ||||||||||| | ||||| |||| || ||||| ||| Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 179215 CTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTCATG 179274 | || || || |||| ||| || ||||| |||||||| |||| |||| || || ||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 179275 CTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCGATTGCTTT 179333 | ||||| |||||||| || || ||| || | | || ||||| ||||| || || || Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGCAATCGCATT 47668 Query 179334 TACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAG 179393 | ||||| ||||| || || ||| |||||| || || || ||||| || || || | Sbjct 47669 CTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGG 47728 Query 179394 TTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACA 179453 |||||||||||| || |||||||| || || || ||| ||||| | || || || || Sbjct 47729 TTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCA 47788 Query 179454 AGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGG 179513 ||| || || || |||||| | ||||| ||||| |||||||||||||| ||| | |||| Sbjct 47789 AGGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGG 47848 Query 179514 TGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGG 179573 | || || | | ||||||||||| | || ||||| ||||| || | ||||||||| Sbjct 47849 CGCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGG 47908 Query 179574 AGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTAT 179633 || ||||| ||||| || || || | || |||| ||| || || ||||| || Sbjct 47909 GGATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAAT 47968 Query 179634 GGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAA 179687 ||| || || ||||| |||||||| || ||||| |||||| | ||| |||||| Sbjct 47969 GGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq1296 Length=110557 Score = 167 bits (184), Expect = 3e-36 Identities = 180/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 178010 ATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCA 178069 ||| || |||| ||||||||| || |||||||||||||| |||| ||| ||||||| || Sbjct 75581 ATTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCA 75522 Query 178070 AGCAGAACACAATATCCTTATGCACCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGG 178129 || || || ||||| |||||||| ||||| |||||| | ||||| ||||| |||||||| Sbjct 75521 GGCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGG 75462 Query 178130 TGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGAC 178189 || || || ||| ||||||||| || | || |||||| | || | || || Sbjct 75461 CGGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAAC 75402 Query 178190 GACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATA 178248 ||||||| ||| || ||| | ||||||| ||||| ||||| |||||||| | || Sbjct 75401 TACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTNTA 75343 >seq177 Length=575278 Score = 143 bits (158), Expect = 3e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 ||||||||| | |||||| ||||| ||||| |||||| ||| || ||||| ||| Sbjct 226682 TTTGACTGTCCAGATGATGTTTACATTCTTGAACATGCTGAGGAACTTGGAATTGACCTT 226741 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636 || ||||| || | |||||| | |||||| | |||||||||||| | ||| | || | Sbjct 226742 CCTTACTCATGCAGAGCTGGTTCTTGTTCTTCTTGTGCTGGTAAAGTTGTTAATGGTGGT 226801 Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATG 138696 || ||||| || ||||||||||||||||||||||||| || ||| | | | Sbjct 226802 GTTAATCAGGAAGATGGTTCTTTCCTTGATGATGACCAAATTGAAGAAGGTTGGGTTCTT 226861 Query 138697 ACTTGCGTAGCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755 ||||| || || ||||| ||||| ||| || ||||| ||| | || || ||||| || Sbjct 226862 ACTTGTGTTGCTTACCCTACATCTGATGTTACTATTGAGACTCACAAGGAAGACGATCT 226920 >seq200 Length=959787 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 179758 GGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAA 179817 || || || || || || ||||| ||||| || || |||||| ||| | ||||| ||| Sbjct 265338 GGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAA 265279 Query 179818 GATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCT 179877 |||||||| || ||||| ||||| || || || ||||| | || ||||| | ||||| Sbjct 265278 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCG 265219 Query 179878 TGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCT 179937 ||| |||| || ||||| || ||||||||| | || ||||| || || || ||||| Sbjct 265218 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 265159 Query 179938 AGTGG 179942 |||| Sbjct 265158 CGTGG 265154 >seq134 Length=619377 Score = 114 bits (126), Expect = 2e-20 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586 ||||||| |||||| | ||||| || || | ||||| |||| ||||| || || | Sbjct 606845 CTGATGACACTTACATCTTAGATGCAGCAGAGAATGCAGGAGTTGAACTTCCATATTCGT 606786 Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGT 138646 | ||||| |||||||| |||||||||||||| || | ||| || |||| ||||||| Sbjct 606785 GCCGTGCCGGTGCATGCTCTACCTGTGCTGGGAAGGTTGTTTCTGGTTCTGTGGATCAGT 606726 Query 138647 CTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAG 138706 |||| || || |||||||| | ||||| | | ||| | | | | || || || | Sbjct 606725 CTGATGGTTCATTTCTTGATGACGGTCAAATGGAGGAAGGCTATGTGCTAACCTGTGTGG 606666 Query 138707 CATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGA 138762 | || || || || |||||| | ||| | || | ||||| | ||| || || ||| Sbjct 606665 CGTATCCAACTTCAGATTGTGTTATTCATACGCACAAAGAAGGCGATCTCTATTGA 606610 >seq67 Length=912534 Score = 100 bits (110), Expect = 3e-16 Identities = 166/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586 |||||||| ||||| || ||| | ||||| || || || | || || || ||||| | Sbjct 134399 CTGATGATGCTTACATTCTGGATTCAGCTGAAGATGCTGGAGTGGAGCTACCTTACTCAT 134340 Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGT 138646 | | ||||||||||| ||||| ||||| || || | ||| ||| |||| ||||||| Sbjct 134339 GCAGAGCTGGTGCATGCTCTACTTGTGCCGGCCAAGTGGTTTCAGGTTCTGTCGATCAGT 134280 Query 138647 CTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATT-TATCATGACTTGCGTA 138705 |||| || || || || ||||| | ||||| | || ||| || | | | || || || Sbjct 134279 CTGATCAATCCTTTCTCGATGAGCAGCAAATAG-AGAAGGGTTATCTTCTCACATGTGTC 134221 Query 138706 GCATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGA 138762 | ||||| | |||||| | ||| | || | || ||||| || || |||||| Sbjct 134220 TCGTACCCGAAATCCGACACCGTGATTTACACACACAAGGAGGAGGACCTCTACTGA 134164 >seq78 Length=963227 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 138523 TGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTAC 138582 ||| | | |||||||||||| ||||||| || || ||| ||| ||||| ||||| ||| Sbjct 249460 TGTCCAGGTGATCAGTACATTCTTGATGTAGCAGAAGAACAAGGCATTGACCTTCCTTAC 249519 Query 138583 TCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGAT 138642 || || | |||||||| |||||| | |||||||| ||| | || ||||| || ||| Sbjct 249520 TCATGCAGGGCTGGTGCTTGTTCTTCATGTGCTGGAAAAGTTGTGGAAGGGGAAGTGGAT 249579 Query 138643 CAGTCTGACCAGTCTTTCCTTGATGATGACCAA 138675 | || || | ||||||||||| || ||| Sbjct 249580 AATTCAGATAATAGCTTCCTTGATGACGATCAA 249612 >seq5156 Length=1562 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 179587 ACATTTAAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAAC 179646 |||||| || || || | || |||| ||| || || ||||| |||| || || ||| Sbjct 942 ACATTTCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAGTGGTCACCGCTAAC 883 Query 179647 CGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTT 179706 || || ||||| || |||||||||||| | ||| |||||| |||||||| || |||||| Sbjct 882 CGCTTATGGTCCCAAATCTTCGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 823 Query 179707 AAGCTGTTTGTTCCTGTCATGGGTCTTTGG 179736 | | | ||||| || | | |||| | ||| Sbjct 822 ATGTTATTTGTCCCAATAACGGGTTTATGG 793 >seq145 Length=649883 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/170 (72%), Gaps = 7/170 (4%) Strand=Plus/Minus Query 177885 TATATGGGACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTT 177944 || ||||| ||| |||||||||| | ||| | ||||||||||| ||||| |||| Sbjct 132355 TACATGGGTCGTAAGTGGGAACTAAGTTTTCGTTTGGGTATGCGCCCTTGGATTGCTGTT 132296 Query 177945 GCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTTC-TAGTCTATCCTTTCGGTCA 178003 ||||| || || || ||| | | ||||| |||| || ||||||| | ||||| Sbjct 132295 GCATATTCAGCTCCAGTT------ACTACTGCAGTTTTTCTTAATCTATCCAATTGGTCA 132242 Query 178004 AGGTTCATTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACT 178053 || || | |||| ||||||||| || |||||| ||||||| |||| Sbjct 132241 GGGAAGCTTTTTAGATGGTATGCCTCTGGGAATCTCTAGTACTTTCAACT 132192 >seq96 Length=755957 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586 |||||||| |||||| | ||||| || || | || || |||| || || || || | Sbjct 745894 CTGATGATGTTTACATCTTAGATGCAGCAGAGAATGCTGGAGTTGAACTCCCTTATTCGT 745835 Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGT 138646 | |||||||| ||||| ||||| |||||||| || | ||| || | || ||||||| Sbjct 745834 GCCGTGCTGGAGCATGCTCTACTTGTGCTGGAAAGATTGTTTCTGGTTCAGTGGATCAGT 745775 Query 138647 CTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAG 138706 | || || || | ||||| | ||| || | ||| ||| | | || || || Sbjct 745774 CCGATGGCTCGTTTTTGGATGACAATCAACTTAAGGAAGGCTTTGTGCTTACCTGTGTTT 745715 Query 138707 CATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACTATACTGA 138762 | || || || | || | ||||||||||| | || || | ||||| |||||| Sbjct 745714 CCTATCCAACCGCAGACGTTGTAATTGAAACTCACAAGGAAGGAGAACTCTACTGA 745659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605459577283840