Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq23 123 2e-23 seq1436 109 5e-19 seq933 104 2e-17 seq1740 98.7 1e-15 seq322 96.9 3e-15 seq37 95.1 1e-14 >seq23 Length=202804 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | ||| | ||| | ||| | || ||||||||||| |||||||||||| Sbjct 5487 GCCTCCGCGGAGACGGAGAACGAGATGGAGCGTGGATTCTTTTTGGATGTTGTAATCGGC 5428 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | |||||||||||||| || || |||| |||||||| ||||| || || Sbjct 5427 AAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTGG 5368 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| |||||| ||| | | || | ||||| | || |||||| Sbjct 5367 AATTCCTTCCTTGTCTTGAATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCTAC 5308 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || |||||||| | ||||| ||||| |||||||| Sbjct 5307 CTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATTTGCAT 5260 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| | ||||| |||||||||||| || || || ||||| | || || || || Sbjct 5697 AACAAGATGAAGTGTAGATTCTTTCTGAATATTATAATCAGCAAGAGTCCTTCCATCCTC 5638 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 || |||||||||||| |||||| ||||||||||| || || || ||||| || || Sbjct 5637 AAGCTGTTTACCAGCAAAGATCAATCGTTGCTGATCAGGTGGAATCCCTTCCTTATCTTG 5578 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 ||| || || | | || | ||||||| | ||| ||||| | || | || || Sbjct 5577 AATCTTCGCCTTCACGTTGTCGATTGTGTCTGATGATTCGACTTCGAGTGTGATGGTTTT 5518 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| | ||||| ||||| |||||||| Sbjct 5517 TCCGGTTAGGGTTTTGACGAAGATTTGCAT 5488 >seq1436 Length=88924 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||| | ||| | ||| ||||||||||| |||||||||||| Sbjct 7265 GCCGCCACGGAGACGGAGAACGAGATGGAGTGTGGATTCTTTTTGGATGTTGTAATCGGC 7324 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| |||||| |||||||| || || |||| ||||| ||||| || || || Sbjct 7325 AAGAGTGCGGCCGTCTTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGG 7384 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||||| ||| | | || | ||||| | || |||||| Sbjct 7385 AATTCCTTCCTTGTCTTGGATTTTGGCTTTGACGTTGTCGATGGTGTCAGAGGATTCTAC 7444 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || |||||||| | ||||| || || || ||||| Sbjct 7445 CTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACAAAGATCTGCAT 7492 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 137214 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 137273 ||| ||||||||||| |||||||||||| | || | ||||||||||||||| || Sbjct 39022 TGTGGATTCTTTTTGGATGTTGTAATCGGCAAGAGTTCGGCCGTCTTCGAGTTGTTTTCC 39081 Query 137274 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 137333 || |||| ||||| || || || || || || ||||| ||||| ||||| ||| Sbjct 39082 GGCGAAGATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATTTTGGCTTT 39141 Query 137334 TAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 137393 | | || | ||||| | || |||||| || | || | || |||||||| | || Sbjct 39142 GACGTTGTCGATGGTGTCGGAGGATTCTACCTCTAGGGTTATGGTTTTGCCGGT-AGGGT 39200 Query 137394 TTTTACGAATATTTGCAT 137411 ||| ||||| || ||||| Sbjct 39201 TTTCACGAAGATCTGCAT 39218 >seq933 Length=173040 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||||||||| ||||| | || ||||| ||||| ||||| ||||| Sbjct 29923 CCCCCACGAAGACGCAAAACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCA 29864 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| ||||| ||||||||| |||| || | |||||||||||||| Sbjct 29863 AGTGTCCTACCATCTTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGATCGGGAGGG 29804 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| || || ||| || ||| | | || | || |||| || || Sbjct 29803 ATACCTTCCTTATCCTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAACC 29744 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||| || ||||| || || || || |||||||| Sbjct 29743 TCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTCACAAAAATTTGCAT 29697 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 137261 || ||||||| |||||||| || || ||||||||||| ||| | || || || || Sbjct 29449 ACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCT-AGGGTTCTTCCATCCTC 29391 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 ||||| || || ||| |||| || | |||||||| ||||| ||||| |||||||| Sbjct 29390 AAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAGGGATGCCCTCTTTGTCCTG 29331 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || || | | || | || || | || ||| || |||| || | || || Sbjct 29330 GATCTTGGCCTTGACATTATCAATTGTATCGGAGGATTCAACCTCAAGGGTGATGGTTTT 29271 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || ||||| || || |||||||| ||||| Sbjct 29270 TCCAGTCAAGGTCTTAACGAATATCTGCAT 29241 >seq1740 Length=56962 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| | ||||| | || | ||||| |||||||| || || ||||||||||| Sbjct 42770 GCCTCCCCTCAAACGAAGGACAAGATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGC 42829 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || ||| | ||||| || || || |||||| | |||| | |||||| || ||||| Sbjct 42830 CAATGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGAGG 42889 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||| || ||||| || || ||||| | || | |||||||| || || Sbjct 42890 AATGCCCTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATCGTGTCTGAACTCTCAAC 42949 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | || || || |||||||| ||||| || || |||||| Sbjct 42950 CTCCAAAGTAATGGTTTTCCCTGTCAATGTCTTTACAAAAATCTGCATA 42998 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGA 137255 ||||| || | ||||| || |||||||| || ||||||||||| ||| | || || Sbjct 21879 CGCAAGACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGCT-AAGGTCCTGCC 21821 Query 137256 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 137315 |||||||| || || |||||| | |||| | |||||| || || || || || ||||| Sbjct 21820 ATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGGATTCCCTCTTT 21761 Query 137316 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 ||| ||| || || | | || | ||||||| | || || |||| || | Sbjct 21760 GTCTTGAATCTTGGCCTTGACATTGTCTATGGTGTCTGAGCTCTCCACCTCAAGGGTGAT 21701 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| || || | || ||||| || || |||||| Sbjct 21700 GGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCATA 21664 >seq322 Length=397916 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTT 137260 ||| ||||||| |||||||| || || ||||||||||| ||| | || || || | Sbjct 333657 AACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCT-AGGGTTCTTCCATCCT 333715 Query 137261 CGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 137320 | ||||| || || ||| |||| || | |||||||| ||||| ||||| |||||||| Sbjct 333716 CAAGTTGCTTCCCTGCAAAGATAAGCCACTGCTGATCAGGAGGGATGCCCTCTTTGTCCT 333775 Query 137321 TAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCT 137380 || || || | | || | || |||| || ||| || |||| || | | | Sbjct 333776 GGATCTTGGCCTTGACATTATCAATTGTATCTGAGGATTCAACCTCAAGGGTGATAATTT 333835 Query 137381 TGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| ||||| || || |||||||| |||||| Sbjct 333836 TGCCAGTCAAGGTCTTAACGAATATCTGCATA 333867 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 137261 || ||||||| |||||||| || || ||||||||||| ||| | || || || || Sbjct 312549 ACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCT-AGGGTTCTTCCATCCTC 312607 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 ||||| || || ||| |||| || | |||||||| ||||| ||||| |||||||| Sbjct 312608 AAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAGGGATGCCCTCTTTGTCCTG 312667 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || || | | || | || || | || ||| || |||| || | || || Sbjct 312668 GATCTTGGCCTTGACATTATCAATTGTATCGGAGGATTCAACCTCAAGGGTGATGGTTTT 312727 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || ||||| || || |||||||| ||||| Sbjct 312728 TCCAGTCAAGGTCTTAACGAATATCTGCAT 312757 >seq37 Length=1182629 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| | ||| | ||||| || || || || || ||||||||||| Sbjct 292903 CCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTTCTGGATGTTGTAATCAGCA 292962 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || |||||| | || || || || |||| |||||||||||||| ||||| Sbjct 292963 AGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGATCCGGAGGA 293022 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| || || ||| | | || | ||||| | | ||| || Sbjct 293023 ATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTTTCCACC 293082 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | ||||| ||||| | ||||| ||||| |||||||| Sbjct 293083 TCAAGGGTGATGGTCTTTCCGGTGAGAGTTTTCACGAAGATTTGCAT 293129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488376527116800