Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1210 183 7e-41 seq520 156 1e-32 seq942 86.0 1e-11 seq87 86.0 1e-11 >seq1210 Length=122563 Score = 183 bits (202), Expect = 7e-41 Identities = 536/821 (65%), Gaps = 15/821 (2%) Strand=Plus/Plus Query 131462 GATATGTATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAA 131521 || ||||| || ||| | | || | |||||||| | ||||| ||||| | | || Sbjct 42292 GAAATGTACAAAAAAGCCGAAGCTTCTTTCTGGACCGCCGAAGAAGTCGATTTATCGGAA 42351 Query 131522 GATATTGATGATTGGGAAAAATTAACCTTGAATGAAAAAG--ATTTTGTTTCCAAAGTTC 131579 ||| || || | ||| | || ||||| || | || | | ||| | || | |||| Sbjct 42352 GATCTTCATCACTGGAACAACCTAACC--GACGGCGAACGCCACTTTATCTCACACGTTC 42409 Query 131580 TTGCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTC 131639 |||| ||||| |||| || ||||| || | || ||||||| | ||||| Sbjct 42410 TTGCCTTCTTTGCCGCTTCCGACGGCATCGTCTTGGAGAATCTTGCAGGAAGATTCATGA 42469 Query 131640 AAGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTA 131699 ||||| || | | | || | | |||||| ||| || ||| | || || Sbjct 42470 AAGAAGTTCAAGTCTCAGAGGCGCGTGCTTTCTACGGATTCCAGATCGCAATCGAGAATA 42529 Query 131700 TTCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAA 131759 ||||| || |||||| | |||||||||| | | | || || || ||| || | Sbjct 42530 TTCATTCTGAAATGTATAGTCTCTTGATTGAGACTTATATCAATGATTCAGTTGAGAAGA 42589 Query 131760 ATAAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTA 131819 || || ||| |||| | | | ||||| |||| ||||||||| || ||||||| Sbjct 42590 ATCGTTTGTTTCATGCAATTGAAACGATTCCTTGTATTACAAAGAAAGCTGATTGGGCTA 42649 Query 131820 TTAAATGGATTCAAGATGATTCCGCTAATT---TTTCTACAAGACTTGTAGCTTTTGCTT 131876 | |||||||| ||||| || ||| || || ||| | || |||||||||| Sbjct 42650 TGAAATGGATC------GATTCATCTGATTCATTTGCTGAAAGGATCGTTGCTTTTGCTT 42703 Query 131877 GTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTG 131936 |||||||||||||||| || || || ||||||||| || || |||||||| || |||| Sbjct 42704 GTGTTGAAGGTATATTTTTCTCTGGAAGTTTCTGTGCAATTTTCTGGCTTAAAAAACGTG 42763 Query 131937 GATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATA 131996 | || |||||||| | | || || || | | || || | || |||| | | ||| Sbjct 42764 GTTTAATGCCTGGTTTAACTTTTTCAAACGAGCTTATTTCACGTGACGAAGGACTTCATT 42823 Query 131997 CTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAACTTGATGAAAATAATATTA 132056 ||| |||||| || || ||| || | |||||| ||| | | | | Sbjct 42824 GTGATTTTGCTTGTTTGATTTATTCGCTTTTGAGAAAGAAACTTAGCGAAGAGCGTGTGA 42883 Query 132057 A-ACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCT 132115 | || | || | |||| || ||||| ||||||| || ||| || ||||| | ||| Sbjct 42884 AGACGA-TTGTGCGCGATGCTGTTGAGATCGAGAGAGAATTTGTTTGCGAAGCGCTTCCT 42942 Query 132116 TGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTGAATTCGTTGCTGAT 132175 ||| ||| |||| ||||||| ||| | |||| |||| ||||| || ||||||||| Sbjct 42943 TGCGCTTTAGTTGGAATGAATGGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCTGAT 43002 Query 132176 CGTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCCAAAACCCCTATACATGG 132235 | || | | ||||| | | || |||||||| || || || | | ||| Sbjct 43003 AGATTGTTGTGTGAGCTTGGTTGTGGGAAAATTTATAATGTTCAGAATCCTTTTGATTGG 43062 Query 132236 ATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGA 132276 ||||| | ||||||||| | || ||||| ||||| || || Sbjct 43063 ATGGATTTGATTTCGCTTCAGGGGAAAACTAACTTTTTTGA 43103 >seq520 Length=294854 Score = 156 bits (172), Expect = 1e-32 Identities = 322/479 (67%), Gaps = 9/479 (2%) Strand=Plus/Minus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATT---TTTCTACA 131857 |||||||| || |||||||| |||||||| ||||| || ||| || || | Sbjct 262298 AAGAAAGCTGATTGGGCTATGAAATGGATC------GATTCATCTGATTCATTTGCTGAA 262245 Query 131858 AGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATC 131917 ||| | || |||||||||||||||||||||||||| || || ||| ||||||| | || Sbjct 262244 AGAATCGTTGCTTTTGCTTGTGTTGAAGGTATATTTTTCTCCGGTAGTTTCTGTTCAATT 262185 Query 131918 TTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCG 131977 ||||||||||| || ||||| || |||||||| | | || || || | | || || Sbjct 262184 TTTTGGCTTAAAAAACGTGGTTTAATGCCTGGTTTAACTTTTTCAAACGAGCTTATTTCA 262125 Query 131978 AGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATAAA 132037 | || |||| | ||| ||| |||||| ||| | ||| || | ||| Sbjct 262124 CGTGACGAAGGTCTTCATTGTGATTTTGCTTGTTTACTTTATTCGCTTTTGAGAAAGAAA 262065 Query 132038 CTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTT 132097 ||| |||| | | | ||| || | | || || ||||| || |||| || ||| Sbjct 262064 CTTAGTGAAGAGCGTGTGAAAACTATTGTTCGTGATGCGGTTGAAATTGAGAGAGAATTT 262005 Query 132098 ATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTAC 132157 || ||||| | ||||| |||| |||| ||||| | ||| | |||| | || Sbjct 262004 GTTTGTGAAGCGCTTCCTTGTGCTTTGGTTGGAATGAACGGTGATTTGATGAGTCAATAT 261945 Query 132158 ATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACC 132217 ||||| || ||||||||| | ||| | ||||||| | | || |||||||| Sbjct 261944 ATTGAGTTTGTTGCTGATAGATTATTGGGTGAACTTGGTTGTGGAAAAATTTATAATGTT 261885 Query 132218 CAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGA 132276 || || || | | |||||||| | ||||| ||| | || ||||| ||||| || || Sbjct 261884 CAGAATCCTTTTGATTGGATGGAATTGATTTCACTTCAGGGGAAAACTAACTTTTTTGA 261826 >seq942 Length=128486 Score = 86.0 bits (94), Expect = 1e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 167202 AATATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCG 167261 ||||||| |||||| ||| ||| || ||||| |||| | | ||||||||||||| Sbjct 6929 AATATTTGAAAAGAACACATAAGTGTTTCATTAACACTCATCATAGCACCAGCATTATCA 6870 Query 167262 AATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAA 167320 || || | | || ||||| ||||||||||| | || || | || | ||| ||| || Sbjct 6869 AACTC-TCCACAGTAATTAGGTGCTGAAAAGATTGTTACAAGTTGTCTATTAGCAAAGAA 6811 Query 167321 TTCATAACCATCTTCAACAAC 167341 |||||| |||||||| ||||| Sbjct 6810 TTCATATCCATCTTCCACAAC 6790 >seq87 Length=904217 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/104 (80%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 167239 TCATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTA 167297 |||| | | |||| |||||||| |||||| |||| ||||||||||| || |||||||| Sbjct 133054 TCATCATAGCACCGGCATTATCAAATTCAC-CGCAGTAATTTGGTGCAGAGAATACAGTC 132996 Query 167298 ACTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAAC 167341 || | ||||| ||| ||| || ||||| |||||||| ||||| Sbjct 132995 ACCAGCTTACGTTTGGCAAAAAACTCATATCCATCTTCTACAAC 132952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186395789586464