Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq183 93.3 9e-14 >seq183 Length=177699 Score = 93.3 bits (102), Expect = 9e-14 Identities = 187/267 (70%), Gaps = 14/267 (5%) Strand=Plus/Minus Query 299037 GGTGCATTGACTGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGACAATTTG 299096 ||||||||| |||||| |||||||| | |||||||||||||| | | | | | Sbjct 59025 GGTGCATTGGTGGCTGGTGCTAAGTATAGGGGTGAATTTGAAGAGAGGTTGAAAGCTGTT 58966 Query 299097 CTAAAAGAA-CTAAAGAAACGTGAA---AATACTATTGTTTTCATTGATGAAATTCATAT 299152 || |||||| | ||||| | |||| || |||| |||||||||||||||||||| | Sbjct 58965 CTGAAAGAAGTTGAAGAAGC-TGAAGGGAAAGTTATTCTTTTCATTGATGAAATTCATCT 58907 Query 299153 TATGGTTGGGGCTGGTTCCGCAAGTAATGGTTCTATGGACATG-AGC-AATATGCTTAAG 299210 | | |||| |||||| || | | || || |||| ||| || ||| | |||| Sbjct 58906 TGTTCTTGGTGCTGGT---AGAACTGAAGGATCAATGG--ATGCTGCTAATCTTTTTAAA 58852 Query 299211 CCAGCACTTTCACGTGGTGAGATTCG-TGTAATTGGTGCAACAACATATGATGAATATCG 299269 || ||| | ||||| | || | ||| |||||||| |||||| ||| |||||| | Sbjct 58851 CCTATGCTTGCTCGTGGACAACTTAGATGT-ATTGGTGCTACAACACTTGAGGAATATAG 58793 Query 299270 TAAAAATATCGAGAAAGATAGTGCATT 299296 || || | || |||||| |||||| Sbjct 58792 AAAGTATGTTGAAAAAGATGCTGCATT 58766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1114779362295456