Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq2319 425 2e-114 seq1296 172 2e-38 seq264 95.1 4e-15 seq318 80.6 8e-11 >seq2319 Length=57875 Score = 425 bits (470), Expect = 2e-114 Identities = 449/586 (77%), Gaps = 4/586 (1%) Strand=Plus/Minus Query 19904 CCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTC 19962 || |||||||| || |||| || ||||| | ||||||| |||||||||| ||||| || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGT-TTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTC 18524 Query 19963 CGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAGCCGA 20022 |||| ||||||| | || ||||| ||||| ||||||| ||| | ||||| || || || Sbjct 18523 AGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGA 18464 Query 20023 ACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTC 20082 ||||| ||||| ||||| ||||| |||||| | ||||| |||||||||||||| || || Sbjct 18463 GCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTC 18404 Query 20083 ACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTG 20141 ||||||||||| ||||||||||| |||| || | || | ||| | | || ||||| | Sbjct 18403 CCTATTCAGTGCTATGCACGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACTACAG 18345 Query 20142 AACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCG 20201 || | ||| | ||| | ||||||| || || ||||| ||||| |||||||| || | Sbjct 18344 AAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTG 18285 Query 20202 TAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCC 20261 |||| ||||||||||| ||||| || |||||||||||||||||| ||||||||| | Sbjct 18284 TAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTC 18225 Query 20262 GTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGG 20321 ||||| |||| |||||||| ||||| ||||| || ||||| || ||||| | || || | Sbjct 18224 GTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAG 18165 Query 20322 GCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACA 20381 | | ||| ||||| || ||| | || || || || |||||||| ||| | | || Sbjct 18164 GTATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATT 18105 Query 20382 ACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTG 20441 | |||||||| ||| | || |||||||| ||| | || |||||||| || || | | Sbjct 18104 CTCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGG 18045 Query 20442 AGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 | || ||||||||||| || |||||||| ||||| || ||||| || Sbjct 18044 AAGTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGC 17999 >seq1296 Length=110557 Score = 172 bits (190), Expect = 2e-38 Identities = 183/239 (77%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 19958 TTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAA 20017 || || |||| ||||||| | || ||||| ||||| ||||||| ||| | ||||| || Sbjct 75580 TTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAG 75521 Query 20018 GCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGT 20077 || || ||||| ||||| ||||| ||||| |||||| | ||||| |||||||||||||| Sbjct 75520 GCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 75461 Query 20078 GGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAGAC 20136 || || ||||||||||| ||||||||||| |||| || | || | ||| | | || || Sbjct 75460 GGCTCCCTATTCAGTGCTATGCACGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAAC 75402 Query 20137 TACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATA 20195 ||| ||| | ||| | ||| | ||||||| || || ||||| ||||| |||| || Sbjct 75401 TACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTNTA 75343 >seq264 Length=551193 Score = 95.1 bits (104), Expect = 4e-15 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 20057 GGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACG 20116 ||||| |||||||||||||| || || ||||||||||| ||||||||||| |||| || Sbjct 291918 GGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTC-CTTGGTAAC 291976 Query 20117 TCCTCGCTTG-TGCGTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGG 20175 | || | ||| | | || ||||| ||| | ||| | ||| | ||||||| || || Sbjct 291977 TTCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGG 292036 Query 20176 GCAAGAAGAAGAGACCTATAA 20196 ||||| ||||| ||||| || Sbjct 292037 TCAAGAGGAAGAAACCTAAAA 292057 >seq318 Length=400206 Score = 80.6 bits (88), Expect = 8e-11 Identities = 139/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 20274 TCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAA 20333 ||||| | ||||| || || || ||||| || ||||| | || || | ||| Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTACTG 349152 Query 20334 TGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTG 20393 |||| || ||| | || | || || |||||||| ||| | | || | ||||||| Sbjct 349153 TGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTG 349212 Query 20394 TCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATG 20453 | ||| | ||||||||||| | | | || |||||||| || || | || || |||||| Sbjct 349213 TAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATA 349272 Query 20454 AACGGAATGCTCATAACTTCCC 20475 |||| || ||||||| || || Sbjct 349273 AACGTAACACTCATAATTTTCC 349294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148780332412992