Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq2319 342 2e-89 seq1296 120 9e-23 seq318 91.5 4e-14 >seq2319 Length=57875 Score = 342 bits (378), Expect = 2e-89 Identities = 429/586 (73%), Gaps = 2/586 (0%) Strand=Plus/Minus Query 29032 CCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGC 29091 || || ||||| || |||| |||||| | |||||||| | ||||| || ||| Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 29092 GACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAA 29151 || | |||||| | || || || || || ||||||| ||| | || || || || || Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 29152 CATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCG 29211 ||||| ||||| ||||| ||||| |||||| | || || ||||| || ||||| ||||| Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 29212 CTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGA 29270 ||||| ||||| ||||||||||| | || || || | | ||| | | || || || || Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACTACAGA 18344 Query 29271 AGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGT 29330 | | ||| ||| | ||||||| || || ||||| ||||| || ||||| || || Sbjct 18343 AAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGT 18284 Query 29331 AGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCG 29390 ||| ||||| ||||| ||||| || |||||||||||||| ||| |||||| || || Sbjct 18283 AGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCG 18224 Query 29391 TTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGG 29450 |||| |||| |||||||| ||||| ||||| || ||||| || ||||| | || || || Sbjct 18223 TTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGG 18164 Query 29451 CGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAA 29510 | ||| ||||| || ||| | || || ||||| |||||||| || | | || Sbjct 18163 TATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTC 18104 Query 29511 CAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGA 29570 | |||||||| ||||| || ||||||||| || | || || |||||||| || | || Sbjct 18103 TCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 18044 Query 29571 AGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 ||| |||||||| ||||| |||||||| ||||| || || || ||| Sbjct 18043 AGTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCT 17998 >seq1296 Length=110557 Score = 120 bits (132), Expect = 9e-23 Identities = 164/227 (72%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 29098 ATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAAC 29157 |||||| | || || || || || ||||||| ||| | || || || || || ||||| Sbjct 75568 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAAT 75509 Query 29158 ATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTT 29217 ||||| ||||| ||||| |||||| | || || ||||| || ||||| ||||| ||||| Sbjct 75508 ATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 75449 Query 29218 AGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGCGTGAGACGACTGAAGACAT 29276 ||||| ||||||||||| |||| | | || | ||| | | || || || ||| | Sbjct 75448 AGTGCTATGCACGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGA 75390 Query 29277 CTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATA 29323 ||| ||| | ||||||| || || ||||| ||||| || | || Sbjct 75389 ATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTNTA 75343 >seq318 Length=400206 Score = 91.5 bits (100), Expect = 4e-14 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29402 TCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAA 29461 ||||| | ||||| || || || ||||| || ||||| | || || | ||| Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTACTG 349152 Query 29462 TGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTG 29521 |||| || ||| | || | ||||| |||||||| || | | || | ||||||| Sbjct 349153 TGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTG 349212 Query 29522 TCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATG 29581 | ||||| |||||||||||| | | || || |||||||| || | ||||| |||||| Sbjct 349213 TAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATA 349272 Query 29582 AGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 | ||||| ||||||| || || | || || ||| Sbjct 349273 AACGTAACACTCATAATTTTCCTCCAGAGCTAGCT 349307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146617836880704