Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq2319 398 2e-106 seq1296 161 3e-35 seq318 118 3e-22 seq219 109 2e-19 seq145 98.7 3e-16 seq264 89.7 1e-13 >seq2319 Length=57875 Score = 398 bits (440), Expect = 2e-106 Identities = 437/579 (75%), Gaps = 2/579 (0%) Strand=Plus/Minus Query 19123 CCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGC 19182 || ||||| || || |||| || ||| | |||| ||| ||||||| || |||| Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 19183 GACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAA 19242 || | ||||||| | || || |||||| ||||||| ||| ||||||| |||||||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 19243 CATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCA 19302 ||||| || || ||||| ||||| |||||| | ||||| |||||||| |||||||| || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 19303 CTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGC-GTGAAACTACTGA 19361 ||||| ||||| ||||||||||| |||| || | || | ||| | | |||||||| || Sbjct 18402 CTATTCAGTGCTATGCACGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGA 18344 Query 19362 AGAGGTATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGT 19421 | | | |||| ||| | || |||| || || ||||| ||||| || ||||| ||||| Sbjct 18343 AAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGT 18284 Query 19422 TGCTGCTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCG 19481 ||||||||||| |||||||| || | || ||||| ||||| |||||||| || Sbjct 18283 AGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCG 18224 Query 19482 TTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGG 19541 |||| |||||||||| | |||||||||||||| || || || |||||| |||| | || Sbjct 18223 TTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGG 18164 Query 19542 GGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAA 19601 | || || ||||| ||||| || ||||| ||||| |||||||| ||| | |||| Sbjct 18163 TATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTC 18104 Query 19602 CAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGA 19661 | |||||||| ||| | || |||||||| ||| | || ||||||||||| || | || Sbjct 18103 TCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 18044 Query 19662 GGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 || ||||| |||||||| |||||||| ||||| || || Sbjct 18043 AGTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGA 18005 >seq1296 Length=110557 Score = 161 bits (178), Expect = 3e-35 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 19188 TATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAA 19247 ||||||| | || || |||||| ||||||| ||| ||||||| |||||||| ||||| Sbjct 75569 TATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAA 75510 Query 19248 CATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATT 19307 || || ||||| ||||| |||||| | ||||| |||||||| |||||||| || ||||| Sbjct 75509 TATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATT 75450 Query 19308 TAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGG 19366 ||||| ||||||||||| |||| || | || | ||| | | |||||||| ||| | | Sbjct 75449 CAGTGCTATGCACGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATG 75391 Query 19367 TATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATA 19414 |||| ||| | || |||| || || ||||| ||||| || | || Sbjct 75390 AATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTNTA 75343 >seq318 Length=400206 Score = 118 bits (130), Expect = 3e-22 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 19487 TACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAA 19546 || || |||| || |||||||| ||||| || || || |||||| || | || | | Sbjct 349087 TATATCTCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCA 349146 Query 19547 GCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATG 19606 | || |||| ||||| || ||| | ||||| |||||||| ||| | |||| | | Sbjct 349147 GTACTGTGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAG 349206 Query 19607 GTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAA 19666 ||||||| ||| | ||||||||||| | | | || ||||||||||| || | || || | Sbjct 349207 GTCGTGTAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTA 349266 Query 19667 TGCACGAACGTAATGCTCATAACTTCCC 19694 |||| ||||||| ||||||| || || Sbjct 349267 TGCATAAACGTAACACTCATAATTTTCC 349294 >seq219 Length=535087 Score = 109 bits (120), Expect = 2e-19 Identities = 120/158 (76%), Gaps = 4/158 (3%) Strand=Plus/Minus Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 || ||||| || ||||||||||| ||||||||||| |||||||| || || ||||||||| Sbjct 252229 TTTATTATCGCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTT 252170 Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGA--GCAGCA 18934 | || ||| ||||| |||||||| || || ||||| ||| | |||| | | || Sbjct 252169 TCTGGATCTCTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGC- 252111 Query 18935 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCT 18972 || || || | ||||| ||||| || ||||||||| Sbjct 252110 -GGCTATTGGTTTGCACTTTTACCCGATATGGGAAGCT 252074 >seq145 Length=649883 Score = 98.7 bits (108), Expect = 3e-16 Identities = 125/171 (73%), Gaps = 7/171 (4%) Strand=Plus/Minus Query 19050 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGT 19109 ||||||||| || |||||||||| || | ||| | || ||||||||||||||| ||| Sbjct 132356 TTACATGGGTCGTAAGTGGGAACTAAGTTTTCGTTTGGGTATGCGCCCTTGGATTGCTGT 132297 Query 19110 TGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTT-GTCTATCCATTTGGTC 19168 ||| || |||||||| ||| | |||| || || ||| |||||||| |||||| Sbjct 132296 TGCATATTCAGCTCCAGTT------ACTACTGCAGTTTTTCTTAATCTATCCAATTGGTC 132243 Query 19169 AAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACT 19219 | || |||| || | ||||||| |||| || | |||| ||||||| Sbjct 132242 AGGGAAGCTTTTTAGATGGTATGCCTCTGGGAATCTCTAGTACTTTCAACT 132192 >seq264 Length=551193 Score = 89.7 bits (98), Expect = 1e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 19276 GGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACG 19335 ||||| |||||||| |||||||| || ||||| ||||| ||||||||||| |||| || Sbjct 291918 GGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTC-CTTGGTAAC 291976 Query 19336 TCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTGG 19394 | || | ||| | | |||||||| ||| | | |||| ||| | || |||| || || Sbjct 291977 TTCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGG 292036 Query 19395 GCAAGAAGAAGAGACTTATAA 19415 ||||| ||||| || || || Sbjct 292037 TCAAGAGGAAGAAACCTAAAA 292057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141102833481792