Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq23 91.5 1e-13 seq1740 89.7 5e-13 seq1642 87.8 2e-12 seq322 84.2 2e-11 >seq23 Length=202804 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||| |||||||| ||| | ||||| ||||||||| ||||| |||| Sbjct 5453 GATTCTTTTTGGATGTTGTAATCGGCAAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCG 5394 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| ||||||||||| || || ||||| || || |||||| ||| | Sbjct 5393 AAGATGAGACGTTGTTGATCTGGTGGAATTCCTTCCTTGTCTTGAATTTTGGCTTTGACG 5334 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | || || || | || | ||||| || || || ||||| Sbjct 5333 TTGTCGATGGTGTCGGAGGATTCTACCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTC 5274 Query 132110 ATGAAAATCTGCATG 132124 | ||| || |||||| Sbjct 5273 ACGAAGATTTGCATG 5259 >seq1740 Length=56962 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | ||||| ||||| |||||||| || | ||||||| ||| || Sbjct 21645 ACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGCCCATCCTCC 21586 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| || || | | | || |||||||| || ||||| || || ||||| ||||| | Sbjct 21585 AACTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCTTGA 21526 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||| | | || | ||||| | ||| ||||||| || | |||||| Sbjct 21525 ATCTTGGCTTTAACATTGTCTATGGTATCAGAACTCTCAACTTCGAGAGTAATGGTTTTA 21466 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || | || || ||||| Sbjct 21465 CCAGTGAGGGTCTTGACAAAGATTTGCAT 21437 >seq1642 Length=65368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 |||||||| | | | |||||||| ||||||||||| || ||| | | | || ||| || Sbjct 54142 ACCAAATGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGCTAAAG-TCCGACCATCCTC 54084 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||||| || | | |||| || | |||||| ||||| || ||||||||||| || Sbjct 54083 AAGCTGTTTTCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGAATGCCTTCTTTGTCCTG 54024 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || || | | || | ||||| | ||| ||||||| || | || || Sbjct 54023 AATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTCTT 53964 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || | ||| || ||||| Sbjct 53963 GCCAGTGAGGGTCTTAACGAAGATTTGCAT 53934 >seq322 Length=397916 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 |||||||| | | | || || || || |||||||| || ||| | ||| | ||| || Sbjct 312093 ACCAAATGAAGGGTAGATTCCTTCTGTATGTTGTAATCAGCT-AGGGTTCTTCCATCCTC 312151 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||||| || | | |||| || | ||| ||||||||||| || || |||||||| Sbjct 312152 AAGCTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAGGGATTCCCTCTTTATCCTG 312211 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || ||||| | || | |||||| | ||| || || | || | ||||| Sbjct 312212 AATCTTAGCTTTCACATTATCGATAGTATCTGAACTCTCAACCTCCAAAGTAATAGTTTT 312271 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| ||| || | ||||| ||||| Sbjct 312272 TCCTGTCAAAGTCTTAACAAAAATTTGCAT 312301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476447817680640