Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1436 114 1e-20 seq23 111 1e-19 seq322 109 5e-19 seq933 104 2e-17 >seq1436 Length=88924 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| ||||| |||| |||||| | ||||| ||||||| ||| || Sbjct 38992 CATGCAAATCTTTGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTC 38933 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || ||||| | || || || ||| |||||||| || || || || ||||| Sbjct 38932 CGACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCTGATCA 38873 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || | || | | || || ||| | ||||||| |||| | | ||||| || Sbjct 38872 GCAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAA 38813 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || ||||| ||||| ||||||||||| | | ||| | ||||| Sbjct 38812 TATCCAGAAAGAGTCCACGCTTCATTTAGTGCTTCGGTTGCGTGGAGG 38765 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | ||||| ||||| ||||||| ||| | || || | || || ||| | Sbjct 7496 CATCATGCAGATCTTTGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATC 7437 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | || || ||||| | || ||| ||||| || || || || || || || || Sbjct 7436 CTCTGACACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCACCTGA 7377 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||||| | ||||| | || ||| |||||||| ||||| | | | | | |||||| Sbjct 7376 CCAGCAGCGTCTCATCTTCGCCGGAAAACAACTTGAAGACGGCCGCACTCTTGCCGATTA 7317 Query 25351 CAATATTCAAAAAGAATCCAC 25371 ||| || |||||||||||||| Sbjct 7316 CAACATCCAAAAAGAATCCAC 7296 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | || || ||||| || |||| ||| | || || | || || ||| | Sbjct 39222 CATCATGCAGATCTTCGTGAAAACCCTA-CCGGCAAAACCATAACCCTAGAGGTAGAATC 39164 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||| || ||||| | || ||| ||||| || || || || || || || || Sbjct 39163 CTCCGACACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGA 39104 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 || || | ||||| | || ||| |||||||||||||| | ||| | | |||||| Sbjct 39103 CCAACAGCGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCCGAACTCTTGCCGATTA 39044 Query 25351 CAATATTCAAAAAGAATCCAC 25371 ||| || |||||||||||||| Sbjct 39043 CAACATCCAAAAAGAATCCAC 39023 >seq23 Length=202804 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || ||||||| | || || ||||| ||||||| ||| | || || | || || ||| | Sbjct 5256 CACCATGCAAATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATC 5315 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||| || ||||| | || ||| |||||| || || || || || || || || Sbjct 5316 CTCCGACACCATCGACAACGTCAAAGCCAAAATTCAAGACAAGGAAGGAATTCCACCAGA 5375 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||| ||| | ||||| | || ||| |||||||||||||||| | | | | |||||| Sbjct 5376 TCAACAACGTCTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTGCCGATTA 5435 Query 25351 CAATATTCAAAAAGAATCCAC 25371 ||| || |||||||||||||| Sbjct 5436 CAACATCCAAAAAGAATCCAC 5456 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || ||||| ||||||||||| | ||||| ||||||||||| | Sbjct 5487 CATGCAAATCTTCGTCAAAACCCTAACCGGAAAAACCATCACACTCGAAGTCGAATCATC 5546 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || || || ||| ||||| || || || || || ||||| Sbjct 5547 AGACACAATCGACAACGTGAAGGCGAAGATTCAAGATAAGGAAGGGATTCCACCTGATCA 5606 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| || | || | | || ||||| || || |||| || | | | ||||| || Sbjct 5607 GCAACGATTGATCTTTGCTGGTAAACAGCTTGAGGATGGAAGGACTCTTGCTGATTATAA 5666 Query 25354 TATTCAAAAAGAATCCACCATTCAT 25378 |||||| |||||||| || ||||| Sbjct 5667 TATTCAGAAAGAATCTACACTTCAT 5691 >seq322 Length=397916 Score = 109 bits (120), Expect = 5e-19 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 |||||| | ||||| || || || || |||||| | || || | || || || || | Sbjct 312301 ATGCAAATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTGGAGGTTGAGAGTTCA 312242 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||||||||| | || ||| || ||| ||||||||||| || || || ||||| Sbjct 312241 -GATACTATCGATAATGTGAAAGCTAAGATTCAGGATAAAGAGGGAATCCCTCCAGATCA 312183 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACA 25352 ||| || || || | | || ||||| || || |||| |||| | ||| ||||||| Sbjct 312182 GCAGAGGCTTATCTTTGCAGGGAAACAGCTTGAGGATGGAAGAACCCT-AGCTGATTACA 312124 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 | || || || ||||| ||| ||||||| || | ||||||||||| |||| Sbjct 312123 ACATACAGAAGGAATCTACCCTTCATTTGGTACTTAGATTGAGAGGTGGAA 312073 Score = 105 bits (116), Expect = 6e-18 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||| || || ||||| ||||| | || || | || || || || | Sbjct 312529 ATGCAGATTTTTGTGAAGACTTTAACAGGAAAGACTATTACTTTAGAGGTTGAGAGTTCA 312470 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||||||||| | || ||| || ||| ||||| || || || || || ||||| Sbjct 312469 -GATACTATCGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGAATCCCTCCAGATCA 312411 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACA 25352 ||| || || || | | || |||||||| || |||| |||| | ||| ||||||| Sbjct 312410 GCAGAGGCTTATCTTTGCAGGGAAACAACTTGAGGATGGAAGAACCCT-AGCAGATTACA 312352 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 | || || || ||||| ||| ||||||| ||| | ||||||||||| |||| Sbjct 312351 ACATACAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAA 312301 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || || || |||||| | ||||| | || || ||| || Sbjct 312758 CATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTC 312699 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| || || | || || || || || |||||||| || || || ||||| Sbjct 312698 CGATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCA 312639 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACA 25352 ||| || || || | | || || ||||| || |||| |||| | ||| ||||||| Sbjct 312638 GCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCT-AGCTGATTACA 312580 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 | || || || ||||| ||| ||||||| ||| | ||||||||||| |||| Sbjct 312579 ACATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAA 312529 >seq933 Length=173040 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || || || |||||| | ||||| | || || ||| || Sbjct 29240 CATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTC 29299 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| || || | || || || || || |||||||| || || || ||||| Sbjct 29300 CGATACAATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCTGATCA 29359 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACA 25352 ||| || || || | | || || ||||| || |||| |||| | ||| ||||||| Sbjct 29360 GCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCT-AGCTGATTACA 29418 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 | || || || ||||| ||| ||||||| ||| | ||||||||||| |||| Sbjct 29419 ACATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAA 29469 Score = 100 bits (110), Expect = 3e-16 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 ||||| | ||||| || || ||||| || || | || || | || || || || | Sbjct 29469 ATGCAGATTTTTGTGAAGACTTTAACAGGGAAGACTATTACTTTAGAGGTTGAGAGTTCA 29528 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| || | || ||| || ||| ||||| || ||||| || |||||||| Sbjct 29529 -GATACTATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAAGGTATCCCTCCCGATCA 29587 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACA 25352 ||| || || || | | || || ||||| || |||| |||| | ||| ||||||| Sbjct 29588 GCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCT-AGCTGATTACA 29646 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 | || || || ||||| ||| ||||||| ||| | ||||||||||| |||| Sbjct 29647 ACATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAA 29697 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGCCAA 25233 |||||| | ||||| || || || || ||||| | ||||| | || || || || | Sbjct 29697 ATGCAAATTTTTGTGAAGACTTTGACAGGAAAGACTATCACTTTGGAGGTTGAGAGTTCA 29756 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| || | || ||| || ||| ||||| || ||||| || |||||||| Sbjct 29757 -GATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGTATCCCTCCCGATCA 29815 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || || || | | || || ||||| ||||||| ||| | | ||||| || Sbjct 29816 GCAGAGGCTTATCTTTGCTGGTAAGCAACTTGAAGATGGTAGGACACTTGCTGATTATAA 29875 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || ||||| |||||||| | ||||| || || Sbjct 29876 CATCCAAAAGGAATCCACTCTCCATTTGGTTTT 29908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444941821639680