Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1210 170 3e-36 seq520 167 3e-35 >seq1210 Length=122563 Score = 170 bits (188), Expect = 3e-36 Identities = 373/548 (68%), Gaps = 22/548 (4%) Strand=Plus/Plus Query 1455734 AACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCA 1455792 ||||| |||| || ||| ||||||| || | |||| || |||||||||||| | Sbjct 42244 AACCCTGACCGTTTCTGTA-TGTTCCCAATTCAATACCCTAAAATCTGGGAAATGTACAA 42302 Query 1455793 AAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT--CGGCGCCGACACGGT 1455850 ||||| |||| || || || ||||||||||| || ||||| | ||| | | | Sbjct 42303 AAAAG-CCGAAGCTTCTTTCTGGACCGCCGAAGAAGTCGATTTATCGGA----AGATCTT 42357 Query 1455851 C--CACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTT 1455908 | |||||| || | ||||| ||| ||||| || ||| ||||| || ||||| Sbjct 42358 CATCACTGGAACAACCTAACCGACGGCGAACGCCACTTTATCTCACACGTTCTTGCCTTC 42417 Query 1455909 TTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGT 1455968 ||| ||||| ||| |||||||| ||||| || || || | || |||||||| || Sbjct 42418 TTT-GCCGCTTCCGACGGCATCGTCTTGGAGAATCTTGCAGGAAGATTCATGAAAGAAGT 42476 Query 1455969 CCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTC 1456028 ||| | ||||||| ||| || ||||| ||||||||||| ||||| || || || || Sbjct 42477 TCAAGTCTCAGAGGCGCGTGCTTTCTACGGATTCCAGATCGCAATCGAGAATATTCATTC 42536 Query 1456029 TGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCT 1456088 ||||| || ||| |||| || || || |||| || | || |||||| | | | Sbjct 42537 TGAAATGTATAGTCTCTTGATTGAGACTTATATCAATGATTCAGTTGAGAAGAATCGTTT 42596 Query 1456089 CTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTG 1456148 |||| || || || ||| | || | | | || || || || ||||| ||||| || Sbjct 42597 GTTTCATGCAATTGAAACGATTCCTTGTATTACAAAGAAAGCTGATTGGGCTATGAAATG 42656 Query 1456149 GATCAACAAGGAGGGCCTC-GACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCG 1456205 |||| | | || || | ||||| || || |||| | ||||| | || | Sbjct 42657 GATCGA-------TTCATCTGATTCATTTGCTGAAAGGATCGTTGCTTTTGCTTGTGTTG 42709 Query 1456206 AGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCA 1456265 | || || |||||||| || |||||||| || || || ||||| || || || || | | Sbjct 42710 AAGGTATATTTTTCTCTGGAAGTTTCTGTGCAATTTTCTGGCTTAAAAAACGTGGTTTAA 42769 Query 1456266 TGCCCGGT 1456273 |||| ||| Sbjct 42770 TGCCTGGT 42777 >seq520 Length=294854 Score = 167 bits (184), Expect = 3e-35 Identities = 372/550 (68%), Gaps = 24/550 (4%) Strand=Plus/Minus Query 1455733 TAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACC 1455791 |||||| |||| || ||| ||||||| || | |||| || |||||||||||| Sbjct 262686 TAACCCTGACCGTTTCTGTA-TGTTCCCGATTCAATACCCTAAAATTTGGGAAATGTACA 262628 Query 1455792 AAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTC 1455851 |||||| |||| || || || ||||| || || || ||||| ||| ||| | || Sbjct 262627 AAAAAG-CCGAAGCTTCATTCTGGACAGCAGAAGAAGTCGATCTCTC-----ACAAGATC 262574 Query 1455852 -----CACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCT 1455906 |||||| || | ||||| ||| || || |||||| ||||| || || | Sbjct 262573 TTCCTCACTGGAACAACCTAACCGACGGCGAACGTCACTTCATCTCACACGTTCTTGCTT 262514 Query 1455907 TTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAG 1455966 | ||| |||||| ||| || || || ||||| || ||||| | || |||||||| Sbjct 262513 TCTTT-GCCGCCTCCGACGGTATAGTCTTGGAGAATCTTGCCGGAAGATTCATGAAAGAA 262455 Query 1455967 GTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCAC 1456026 || ||| | | ||||||||| |||||||| ||||||||||| || |||||||| || Sbjct 262454 GTTCAAGTCTCTGAGGCACGTGCCTTTTACGGTTTCCAGATCGCGATTGAAAACATTCAT 262395 Query 1456027 TCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCAC 1456086 ||||||| || ||| |||| || || || |||| || | |||| ||| | | Sbjct 262394 TCTGAAATGTATAGTCTCTTGATTGAGACTTATATCAATGATTCTATCGAAAAGAATCGT 262335 Query 1456087 CTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAG 1456146 | |||| || || |||||| | || | | || || || || ||||| ||||| Sbjct 262334 TTATTTCATGCAATTGACACGATTCCTTGTATTGCCAAGAAAGCTGATTGGGCTATGAAA 262275 Query 1456147 TGGATCAACAAGGAGGGCCTC-GACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGT 1456203 |||||| | | || || | ||||| || | |||| | ||||| | || Sbjct 262274 TGGATCGA-------TTCATCTGATTCATTTGCTGAAAGAATCGTTGCTTTTGCTTGTGT 262222 Query 1456204 CGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCT 1456263 || || || |||||||| || |||||||| | || |||||||| || || || || | Sbjct 262221 TGAAGGTATATTTTTCTCCGGTAGTTTCTGTTCAATTTTTTGGCTTAAAAAACGTGGTTT 262162 Query 1456264 CATGCCCGGT 1456273 ||||| ||| Sbjct 262161 AATGCCTGGT 262152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175166104794688