Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1740 131 2e-25 seq1039 122 8e-23 seq933 120 3e-22 seq322 120 3e-22 seq37 107 2e-18 seq1436 91.5 1e-13 seq319 89.7 5e-13 seq1642 87.8 2e-12 >seq1740 Length=56962 Score = 131 bits (144), Expect = 2e-25 Identities = 146/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||| ||||| ||||| | || || |||||||| || ||||| Sbjct 42807 TCCTTCTGGATGTTGTAATCAGCCAATGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAA 42866 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| |||||||||| ||||| || |||||||||| |||||| || | | | Sbjct 42867 ATCAACCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTTACATTG 42926 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | |||||| ||| || ||||||| || || ||||| || ||||| || || Sbjct 42927 TCAATCGTGTCTGAACTC---TCAACCTCCAAAGTAATGGTTTTCCCTGTCAATGTCTTT 42983 Query 35723 ACAAATATCTGCAT 35736 ||||| |||||||| Sbjct 42984 ACAAAAATCTGCAT 42997 Score = 113 bits (124), Expect = 4e-20 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||| |||||||| || | || || |||||||| || || || Sbjct 22311 TCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCATCTTCAAGCTGCTTCCCAGCGAAA 22252 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | | ||||||||||| ||||| || |||||||||| |||||| || | | | Sbjct 22251 ATGAGTCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTTACATTG 22192 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| ||| || ||||||| ||||| || || || ||||| || ||| Sbjct 22191 TCAATTGTGTCTGAACTC---TCAACCTCCAAAGTGATGGTCTTCCCTGTCAAGGTCTTC 22135 Query 35723 ACAAATATCTGCAT 35736 ||||| || ||||| Sbjct 22134 ACAAAGATTTGCAT 22121 Score = 107 bits (118), Expect = 2e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||||||||||||||| | || |||| ||| || || ||||| Sbjct 43035 TCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCTTCCAACTGTTTTCCGGCAAAA 43094 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || ||||||||| | ||| | | ||||||||| ||||| ||| | | | Sbjct 43095 ATGAGCCTCTGCTGGTCTGGAGGGATACCCTCCTTGTCTTGAATCTTAGCCTTTACATTG 43154 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| |||| || ||||||| || || ||||| || || | || ||| Sbjct 43155 TCAATTGTGTCTGAGCTC---TCAACCTCCAAAGTAATTGTTTTGCCTGTAAGGGTCTTC 43211 Query 35723 ACAAATATCTGCAT 35736 ||||| |||||||| Sbjct 43212 ACAAAAATCTGCAT 43225 Score = 104 bits (114), Expect = 2e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||| |||||||| || | || |||| ||| || || ||||| Sbjct 22083 TCCTTCTGGATGTTGTAATCAGCCAAGGTCCGGCCATCTTCCAACTGTTTCCCGGCAAAA 22024 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| || || || | |||| | |||||||||| ||||| ||||| | | Sbjct 22023 ATCAACCTTTGTTGATCTGGGGGAATACCCTCCTTGTCCTGAATCTTAGCCTTCACATTG 21964 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| |||| || ||||||| || || || || || || | ||| ||| Sbjct 21963 TCAATAGTGTCTGAGCTC---TCAACCTCCAAAGTTATTGTCTTTCCGGTAAGAGTCTTC 21907 Query 35723 ACAAATATCTGCAT 35736 ||||| |||||||| Sbjct 21906 ACAAAAATCTGCAT 21893 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || |||||||| ||||| ||||| || || | || ||||||||||| || ||||| Sbjct 42350 CTCTTTCTGAATGTTATAATCAGCCAAAGTCCGGCCATCTTCCAGCTGCTTTCCAGCAAA 42409 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| |||||||| | || | | || |||||| ||||| ||||| | | Sbjct 42410 AATCAACCTTTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGTATCTTGGTCTTCACATT 42469 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| || ||||||| || || || || || || | ||| || Sbjct 42470 GTCAATAGTGTCTGAGCTC---TCTACCTCCAAGGTAATAGTCTTTCCGGTAAGAGTCTT 42526 Query 35722 CACAAATATCTGCAT 35736 ||| || |||||||| Sbjct 42527 CACGAAAATCTGCAT 42541 Score = 93.3 bits (102), Expect = 4e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||||| | || ||||||||| ||||||||||| || Sbjct 43788 CCACCACGGAGACGGAAAACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCA 43847 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA-AGG 35628 | ||| || | || ||||||||||| || ||||| |||| ||||||||||| || ||| Sbjct 43848 AGGGTACGACCATCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCGGATAGG 43907 Query 35629 AACGCTCTCCTTGTC 35643 | | || ||||| || Sbjct 43908 ATCCCT-TCCTTATC 43921 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||| | | |||||| | || | || |||||| ||||||||||| || || Sbjct 22576 TCCACCACGAAGGCGCAACACAAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGC 22517 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | || | | || |||| ||||| || ||||| ||||||| |||||| || | || Sbjct 22516 AAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 22457 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| || ||| ||| | | | | | ||||| ||| || Sbjct 22456 GATTCCTTCCTTGTCCTGTATTTTTGCCTTGACATTATCAATTGTGTCTGAACTTTCTAC 22397 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || ||||| || |||||||| |||||||| Sbjct 22396 TTCCAAGGTGATGGTCTTTCCGGTCAATGTCTTCACAAAGATCTGCAT 22349 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||| | | ||| || | ||| | ||| |||||| ||||||||||| || || Sbjct 42086 TCCACCACGAAGGCGCAAAACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGC 42145 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | || | | || |||| ||||| || ||||| ||||||| |||||| || | || Sbjct 42146 AAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 42205 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTG--CTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 | | |||||||||| || | ||||| ||| | | | | | ||||| ||| Sbjct 42206 GATTCCCTCCTTGTCC-TG-TATTTTGGCCTTGACATTATCAATTGTGTCTGAACTTTCT 42263 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | || || || || || ||||| || |||||||| || ||||| Sbjct 42264 ACCTCTAAGGTAATGGTCTTTCCAGTCAAGGTCTTCACAAAGATTTGCAT 42313 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | || ||||||||| ||||||||||| || | ||| ||| | || || Sbjct 21646 CACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGCCCATCCTC 21587 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 || |||||| || ||||| |||| ||||||||||| Sbjct 21586 CAACTGCTTTCCAGCAAAAATCAGACGCTGCTGGTC 21551 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| || | ||| | || || || || ||||||||||| || Sbjct 21891 CCACCACGAAGTCGCAAGACAAGATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGCT 21832 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| | | || || |||||||| || ||||| ||||||| |||||||| | || Sbjct 21831 AAGGTCCTGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGG 21772 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | ||| ||||| ||||| ||| | | | | | ||||| |||| ||| Sbjct 21771 ATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTGTCTATGGTGTCTGAGCTC---TCC 21715 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || || || || | || || ||||| |||||||| Sbjct 21714 ACCTCAAGGGTGATGGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 21665 >seq1039 Length=240209 Score = 122 bits (134), Expect = 8e-23 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || ||||||||||| |||||||| || | || || |||||||| || ||||| Sbjct 128884 TCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCATCTTCGAGCTGCTTTCCAGCAAAA 128943 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||| |||| |||| | |||||| ||| ||||| ||||| | | Sbjct 128944 ATCAACCTTTGCTGATCCGGGGGAATTCCCTCCTTATCCTGTATCTTAGCCTTCACATTG 129003 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | |||||| |||| || ||||||| || || || ||||| || | ||||||| Sbjct 129004 TCAATCGTGTCTGAGCTC---TCAACCTCCAAAGTTATTGTCTTACCGGTAAGAGTTTTC 129060 Query 35723 ACAAATATCTGCAT 35736 || || |||||||| Sbjct 129061 ACGAAAATCTGCAT 129074 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||| | | ||| || | || | ||| |||||| ||||||||||| || || Sbjct 128619 TCCACCACGAAGGCGCAAAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGC 128678 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | ||| | | || |||| ||||| || ||||| ||||||| |||||| || | || Sbjct 128679 AAGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGG 128738 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | ||||||||| || ||| ||| | | | | | ||| || ||| || Sbjct 128739 GATTCCCTCCTTGTCTTGTATTTTTGCCTTGACATTATCGATCGTATCTGAACTTTCTAC 128798 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| || || || || || |||||||| |||||||| |||||||| Sbjct 128799 CTCCAATGTAATGGTCTTTCCTGTCAAAGTCTTCACAAAGATCTGCAT 128846 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||||||| | ||| ||||||||| || |||||||| || Sbjct 129304 CCACCACGGAGACGGAGCACCAAATGGAGCGTGGACTCCTTTTGGATATTGTAATCAGCA 129363 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 | ||| ||| |||| ||||||||||| || ||||| |||| ||||||||||| Sbjct 129364 AGGGTACGCCCGTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTC 129416 >seq933 Length=173040 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| | || || | ||||||||| | ||| ||||| || ||||||||||| | Sbjct 29469 TTCCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAG 29410 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | | ||||| | || || || ||||| || ||||| || | || |||||| || | || Sbjct 29409 CTAGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAG 29350 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | || ||| |||||| |||||| ||| | | | | | || ||| ||||| | Sbjct 29349 GGATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATTGTATCGGAGGATTCAA 29290 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| | ||||| ||||| || ||||| || || || ||||||||||| Sbjct 29289 CCTCAAGGGTGATGGTTTTTCCAGTCAAGGTCTTAACGAATATCTGCAT 29241 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || ||||| |||||||| ||||| || || | || |||| ||||||||| ||||| Sbjct 30343 TCTTTCTGAATATTGTAATCTGCCAAAGTACGACCATCCTCCAACTGCTTACCGGCAAAA 30284 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || ||||||||| | |||| | |||||| || |||||| |||| | | Sbjct 30283 ATAAGCCTCTGCTGGTCTGGGGGAATACCCTCCTTATCTTGAATCTTTGCTTTCACATTA 30224 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | || || ||| ||||||||||| || || || || || || | || ||| Sbjct 30223 TCGATTGTATCAGAGCT---TTCCACCTCCAAGGTAATAGTCTTCCCAGTAAGGGTCTTC 30167 Query 35723 ACAAATATCTGCAT 35736 |||||||| ||||| Sbjct 30166 ACAAATATTTGCAT 30153 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/201 (72%), Gaps = 9/201 (4%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| ||||||||||| || | ||| || | || |||| || ||||| ||||| Sbjct 29204 CTCCTTTTGGATGTTGTAATCCGCAAGGGTGCGGCCATCTTCCAATTGTTTACCAGCAAA 29145 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||| || | |||| | |||||||| |||| || |||| | || Sbjct 29144 GATAAGCCTTTGCTGATCTGGTGGAATCCCTTCCTTGTCTTGGATC-TTAGCTTTAACGT 29086 Query 35665 TG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 || | | || || ||| |||||||| | ||||| ||||| || ||||| |||| Sbjct 29085 TGTCTATGGTATCAGAACTC---TCCACCTCAAGGGTGATGGTTTTGCCAGTCAATGTTT 29029 Query 35721 TCACAAATATCTGCATTCTGT 35741 |||| || || |||| ||||| Sbjct 29028 TCACGAAAATTTGCA-TCTGT 29009 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| | || || | ||||||||| | ||| ||||| || ||||||||||| | Sbjct 29697 TTCCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAG 29638 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | | ||||| | || || || ||||| || ||||| || | || |||||| || | || Sbjct 29637 CTAGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCGGGAG 29578 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATT 35684 | | | ||||| ||| ||||| |||| | | | | || || ||| | Sbjct 29577 GGATACCTTCCTTATCCTGAATCTTGGCTTTCACATTATCAATAGTATCTGAACTC---T 29521 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | ||||| | || || || || || || ||||| |||||||| |||||||||| Sbjct 29520 CAACCTCTAAAGTAATAGTCTTCCCTGTTAAAGTCTTCACAAAAATCTGCATTC 29467 >seq322 Length=397916 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| | || || | ||||||||| | ||| ||||| || ||||||||||| | Sbjct 312529 TTCCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAG 312588 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | | ||||| | || || || ||||| || ||||| || | || |||||| || | || Sbjct 312589 CTAGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAG 312648 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | || ||| |||||| |||||| ||| | | | | | || ||| ||||| | Sbjct 312649 GGATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATTGTATCGGAGGATTCAA 312708 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| | ||||| ||||| || ||||| || || || ||||||||||| Sbjct 312709 CCTCAAGGGTGATGGTTTTTCCAGTCAAGGTCTTAACGAATATCTGCAT 312757 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| | || || | |||||||| | ||| ||||| || ||||||||||| | Sbjct 333638 TTCCACCTCTCAATCTAAGAACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAG 333697 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | | ||||| | || || || ||||| || ||||| || | || |||||| || | || Sbjct 333698 CTAGGGTTCTTCCATCCTCAAGTTGCTTCCCTGCAAAGATAAGCCACTGCTGATCAGGAG 333757 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | || ||| |||||| |||||| ||| | | | | | || || ||||| | Sbjct 333758 GGATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATTGTATCTGAGGATTCAA 333817 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| | ||||| |||| || ||||| || || || ||||||||||| Sbjct 333818 CCTCAAGGGTGATAATTTTGCCAGTCAAGGTCTTAACGAATATCTGCAT 333866 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/236 (70%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | ||||| |||||| | || | || ||||||||| ||||||||||| || Sbjct 333868 CCACCTCTTAACCGCAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCTGCA 333927 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || | || ||||| || || || | || ||||| || | ||| Sbjct 333928 AGGGTGCGGCCATCTTCTAATTGTTTACCGGCGAAGATAAGCCTTTGCTGATCAGGTGGA 333987 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | |||||||| |||| || |||| | |||| | | || || ||| || Sbjct 333988 ATCCCTTCCTTGTCTTGGATC-TTAGCTTTAACGTTGTCTATGGTATCAGAACTC---TC 334043 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 | |||| | ||||| ||||||||| |||| |||||||| || || |||| ||||| Sbjct 334044 CGCCTCAAGGGTGATGGTTTTACCCATCAATGTTTTCACGAAAATTTGCA-TCTGT 334098 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| | || || | |||||||| | ||| ||||| || ||||||||||| | Sbjct 312073 TTCCACCTCTCAATCTAAGTACCAAATGAAGGGTAGATTCCTTCTGTATGTTGTAATCAG 312132 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | | ||||| | || || ||||| || || ||||| || | || |||||| || | || Sbjct 312133 CTAGGGTTCTTCCATCCTCAAGCTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAG 312192 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATT 35684 | | | ||| || ||| ||||| |||| | | | | || || ||| | Sbjct 312193 GGATTCCCTCTTTATCCTGAATCTTAGCTTTCACATTATCGATAGTATCTGAACTC---T 312249 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | ||||||| || || ||||| || |||||||| || ||||| || ||||||| Sbjct 312250 CAACCTCCAAAGTAATAGTTTTTCCTGTCAAAGTCTTAACAAAAATTTGCATTC 312303 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/234 (68%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| | || || | ||||||||| | ||| ||||| || ||||||||||| | Sbjct 312301 TTCCACCTCTCAATCTAAGCACCAAATGAAGGGTAGATTCCTTCTGTATGTTGTAATCTG 312360 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | | ||||| | || || || || || || ||||| || | || |||||| || | || Sbjct 312361 CTAGGGTTCTTCCATCCTCAAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAG 312420 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATT 35684 | | | ||||| ||| ||||| |||| | | | | || || ||| | Sbjct 312421 GGATTCCTTCCTTATCCTGAATCTTAGCTTTCACATTATCGATAGTATCTGAACTC---T 312477 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | ||||| | || || || || || || ||||| |||||||| |||||||||| Sbjct 312478 CAACCTCTAAAGTAATAGTCTTTCCTGTTAAAGTCTTCACAAAAATCTGCATTC 312531 >seq37 Length=1182629 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || | || ||| | ||| | ||| |||||| || || |||||||| || Sbjct 291941 CCACCCCTCAAACGCAGCACAAGATGAAGGGTAGACTCCTTCTGGATATTGTAATCCGCA 292000 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCC-GCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | ||| | | || |||| ||| ||| || ||||| ||||||| |||||| || | || Sbjct 292001 AGGGTCCTTCCATCTTCCAACTGTTTATCCAGCAAAGATCAACCTCTGCTGATCTGGGGG 292060 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTC 35685 || | |||||| ||| |||||| ||| | | | | | ||||| ||| ||| Sbjct 292061 AATACCCTCCTTATCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCTGAGCT---TTC 292117 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||| || || || || || |||||||| ||||||||||| ||||| Sbjct 292118 CACCTCCAAGGTTATGGTCTTTCCGGTCAAAGTCTTCACAAATATTTGCAT 292168 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/201 (72%), Gaps = 9/201 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| || | || | |||| |||| |||||| || || || Sbjct 292938 CTCCTTCTGGATGTTGTAATCAGCAAGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAA 292997 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||| |||| ||||| | ||||||||| |||| || |||| || Sbjct 292998 GATGAGACGTTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATC-TTGGCTTTGACGT 293056 Query 35665 TG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 || | | ||||| ||| ||||||||| | ||||| || || || || | ||||| Sbjct 293057 TGTCGATGGTGTCAGAGCT---TTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGAGTTT 293113 Query 35721 TCACAAATATCTGCATTCTGT 35741 |||| || || |||| ||||| Sbjct 293114 TCACGAAGATTTGCA-TCTGT 293133 >seq1436 Length=88924 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| |||||||||||||| | || || |||| || || || || || || || Sbjct 7302 TCTTTTTGGATGTTGTAATCGGCAAGAGTGCGGCCGTCTTCAAGTTGTTTTCCGGCGAAG 7361 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | |||| | |||||||| ||| ||| |||| ||| Sbjct 7362 ATGAGACGCTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGGAT-TTTGGCTTTGACGTT 7420 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| ||||| ||||| | || || ||||| || || | |||||||| Sbjct 7421 GTCGATGGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCAC 7480 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 7481 AAAGATCTGCAT 7492 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || ||||| |||||||||||||| | ||||| |||| || || || || || || || Sbjct 39029 TCTTTTTGGATGTTGTAATCGGCAAGAGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAG 39088 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||| ||||| | |||| | |||||||| ||| ||| |||| ||| Sbjct 39089 ATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGAT-TTTGGCTTTGACGTT 39147 Query 35666 G-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | |||||| ||||| ||||| | || || ||||| || || | |||||||| Sbjct 39148 GTCGATGGTGTCGGAGGATTCTACCTCTAGGGTTATGGTTTTGCCGGT-AGGGTTTTCAC 39206 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 39207 GAAGATCTGCAT 39218 >seq319 Length=603634 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| | | ||||| ||||| || | || |||||||| ||||| ||||| | Sbjct 440686 TTCCACCCCTGAGCCTCAGGACCAAGTGAAGTGTTGATTCCTTTTGTATGTTATAATCAG 440745 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | | || || | || |||||||||||||| ||||| ||||||| ||||||||| | || Sbjct 440746 CAAGAGTGCGGCCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCGGGAG 440805 Query 35628 GAACGCTCTCCTTGTCC 35644 | | | ||||||||| Sbjct 440806 GGATACCTTCCTTGTCC 440822 >seq1642 Length=65368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || |||||||| ||||| ||||| || || | || ||||||||||| || ||||| Sbjct 33958 CTCTTTCTGAATGTTATAATCAGCCAAAGTCCGGCCATCTTCCAGCTGCTTTCCAGCAAA 33899 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| | |||||||| | || | | || |||||| ||||| ||| | | | Sbjct 33898 AATCAATCTTTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGTATCTTGGCCTTTACATT 33839 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| || ||||||| || || || || || || | ||| || Sbjct 33838 GTCAATAGTGTCTGAGCTC---TCTACCTCCAAGGTAATAGTCTTCCCGGTAAGAGTCTT 33782 Query 35722 CACAAATATCTGCAT 35736 ||| || |||||||| Sbjct 33781 CACGAAAATCTGCAT 33767 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||| | | ||| || | || | ||| |||||| ||||||||||| || || Sbjct 34222 TCCACCACGAAGGCGCAAAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGC 34163 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | || | | || |||| ||||| || ||||| ||||||| ||| || || | || Sbjct 34162 AAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGTTGATCTGGCGG 34103 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | |||||||||| || ||| ||||| | | | | ||||| ||| || Sbjct 34102 GATTCCCTCCTTGTCCTGTATTTTTGCCTTCACATTATCTATGGTGTCTGAACTTTCTAC 34043 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | || || || || || ||||| || |||||||| || ||||| Sbjct 34042 CTCTAAGGTAATGGTCTTTCCAGTCAACGTCTTCACAAAGATTTGCAT 33995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450639067953920