Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq2319 392 4e-104 seq432 390 1e-103 seq200 158 1e-33 seq1296 143 3e-29 seq318 113 5e-20 seq81 113 5e-20 seq26 113 5e-20 seq1868 109 6e-19 seq145 107 2e-18 seq485 98.7 1e-15 seq134 93.3 5e-14 seq2280 89.7 6e-13 >seq2319 Length=57875 Score = 392 bits (434), Expect = 4e-104 Identities = 455/609 (75%), Gaps = 6/609 (1%) Strand=Plus/Minus Query 158075 CCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCC 158134 ||||| || || || | |||||| ||| | |||| || | ||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 158135 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 158194 |||| ||||||||| || |||||||||||||| |||| ||| ||||||| || || || Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 158195 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCT 158254 || || || |||||||| ||||| || ||| | ||||| ||||| |||||||| || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 158255 CTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGA 158313 || ||| ||||||||| || | || ||||| | | | || | ||||| || || Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACTACAGA 18344 Query 158314 AACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGT 158373 || || || ||| | ||||| | ||||||||||| ||||| ||||| || || || Sbjct 18343 AAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGT 18284 Query 158374 TGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCG 158433 || || ||||| || || || || |||||||||||||||||| ||||||||||| || Sbjct 18283 AGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCG 18224 Query 158434 TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGG 158493 ||| || || |||||||| ||||| |||||||| || || |||||||| ||||| | || Sbjct 18223 TTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGG 18164 Query 158494 CGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGAT 158551 | ||| || ||||| ||||| | || || || || || ||||| ||| || ||||| Sbjct 18163 --TATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGAT 18106 Query 158552 GGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATG 158611 ||| |||||||| | ||||||||||| ||| | | ||||| ||| ||||||||| Sbjct 18105 TCTCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATG 18046 Query 158612 GAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCTGCTGAGTCT 158671 |||||||||||||| |||||||| || || ||||| || || || ||||| | ||| || Sbjct 18045 GAAGTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGAAGCT 17986 Query 158672 ACACCTGTA 158680 || || || Sbjct 17985 CCATCTATA 17977 >seq432 Length=331984 Score = 390 bits (432), Expect = 1e-103 Identities = 412/537 (77%), Gaps = 8/537 (1%) Strand=Plus/Plus Query 159595 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAA 159654 |||||| | | |||| ||||||||||| | || || || || || ||||| ||| Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 159655 CTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATG 159714 | || || | ||| | ||||||||||| |||||||| |||| | |||||||||||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 159715 CTACGGCAATTTGAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTT 159773 |||| ||||||||| ||||||| ||| ||| | || ||||| ||||| || || || Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTGCGGCCTTATAATGCAATCGCATT 47668 Query 159774 CTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTC 159833 ||| ||||| |||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 47669 CTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGG 47728 Query 159834 ATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTC---CTGTTGTTCCT 159890 |||||||||||||||||||| || |||||||| || ||| ||||| || || |||| Sbjct 47729 TTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCC- 47787 Query 159891 TCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACT 159950 ||||||| || || ||||| | ||||| || ||||||||||||||||||||| || | Sbjct 47788 -AAGGGTTT-CATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATT 47845 Query 159951 AGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGA 160010 || | || || || || || || ||||| ||||| ||||| || || || |||||||| Sbjct 47846 GGGCGCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGA 47905 Query 160011 TGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTC 160070 ||| || ||||| ||||| || ||| | || || |||| ||||| |||||||| Sbjct 47906 TGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTC 47965 Query 160071 TATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTTTCTAACAA 160127 |||||||| || |||||||| ||||| || ||||| || ||||| ||||| || || Sbjct 47966 AATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq200 Length=959787 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 160147 ATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCT 160206 ||||| ||||| || || | ||| |||||| || |||| | | ||||| || Sbjct 265389 ATGTTATTTGTCCCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCC 265330 Query 160207 TTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAA 160266 | ||||| ||||| || || ||||| ||| || || | ||||| |||||||||||| Sbjct 265329 CTGAACCTACGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 265270 Query 160267 TTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCA 160326 |||||||| ||||||||||| || || || || || ||||| ||||||| |||||||| Sbjct 265269 TTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCG 265210 Query 160327 CCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACC 160376 || ||||| || ||||||||| |||| ||||||||||| || ||||| Sbjct 265209 GCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 265160 >seq1296 Length=110557 Score = 143 bits (158), Expect = 3e-29 Identities = 175/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 158129 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 158188 || || |||| ||||||||| || |||||||||||||| |||| ||| ||||||| || Sbjct 75580 TTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAG 75521 Query 158189 GCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 158248 || || || || || |||||||| ||||| || ||| | ||||| ||||| |||||||| Sbjct 75520 GCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 75461 Query 158249 GGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAAC 158307 || || || ||| ||||||||| || | || |||| || | | || | ||||| Sbjct 75460 GGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAAC 75402 Query 158308 GACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAGACCT 158363 || |||| || || ||| | ||||| | ||||||||||| ||||| |||| Sbjct 75401 TACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCT 75346 >seq318 Length=400206 Score = 113 bits (124), Expect = 5e-20 Identities = 161/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 158445 TCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCA--AC 158502 ||||| | ||||| || ||||| || || |||||||| | || | || | ||| || Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGG--TATCAGTAC 349150 Query 158503 CATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCG 158562 |||| ||||| | || | || || || ||||| ||| || ||||| ||| ||||| Sbjct 349151 TGTGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCG 349210 Query 158563 TGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCA 158622 ||| | ||||| ||||| ||| | ||||| ||| |||||||||||||||||||| Sbjct 349211 TGTAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCA 349270 Query 158623 TGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCTGCTGA 158667 | | |||||| | || || || || | || || ||||| | ||| Sbjct 349271 TAAACGTAACACTCATAATTTTCCTCCAGAGCTAGCTGCGGTTGA 349315 >seq81 Length=695010 Score = 113 bits (124), Expect = 5e-20 Identities = 105/131 (80%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 159751 CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTT-TGTCAGC-GTATTCC 159808 || ||||| ||| | || || ||||| |||| ||||||||||| | || | ||||| | Sbjct 211507 CGGCCTTATAATACAATCGCATTCTCCAGTCCAATTGCTGTTTTATTTCTTCTGTATTTC 211566 Query 159809 TTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAA 159868 ||| |||||||||||||||||| |||||||||||||||||||| || ||| |||| | Sbjct 211567 ATATTTATCCACTGGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAACAGCTA 211626 Query 159869 TCTTTAGATTC 159879 | ||| ||||| Sbjct 211627 TATTTCGATTC 211637 >seq26 Length=132285 Score = 113 bits (124), Expect = 5e-20 Identities = 97/120 (81%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 160251 AGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACT 160310 ||| |||||||||| ||||||||| ||||||||||| || || || || |||||||| | Sbjct 33083 AGCGGAAGATCCTGGATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTAT 33024 Query 160311 TCGTGCTTGGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGT 160370 |||||| |||| ||| || |||| || ||||||||| |||| ||||||||||| || Sbjct 33023 TCGTGCGTGGACGGCGGCTCAAGATCTGCCTCATGAAAACCTTATGTTCCCTGAGGAGGT 32964 >seq1868 Length=44937 Score = 109 bits (120), Expect = 6e-19 Identities = 110/142 (77%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 160036 GCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 160095 || ||| | || || |||| ||||| |||||||| ||||||||||| |||||||| ||| Sbjct 39527 GCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGG 39586 Query 160096 TCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 160155 || || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| ||| Sbjct 39587 TCCCAAATCTT-GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 39645 Query 160156 GTGCCTGTTATGGGTCTATGGA 160177 || || || | ||| ||| || Sbjct 39646 GTCCCAGTAACTGGTTTATTGA 39667 >seq145 Length=649883 Score = 107 bits (118), Expect = 2e-18 Identities = 126/169 (75%), Gaps = 5/169 (3%) Strand=Plus/Minus Query 158003 TATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTA 158062 || ||||| ||| |||||||||| || ||||| ||||||||||| ||||| ||| Sbjct 132355 TACATGGGTCGTAAGTGGGAACTAAGTTTTCGTTTGGGTATGCGCCCTTGGATTGCTGTT 132296 Query 158063 GCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAA 158122 |||||||| |||||||| || | || ||| | ||| || ||||||| | ||||| Sbjct 132295 GCATATTCAGCTCCAGTTACTACTGC-AGT----TTTTCTTAATCTATCCAATTGGTCAG 132241 Query 158123 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACT 158171 || || | |||| ||||||||| || |||||| ||||||| |||| Sbjct 132240 GGAAGCTTTTTAGATGGTATGCCTCTGGGAATCTCTAGTACTTTCAACT 132192 >seq485 Length=309328 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 160266 ATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGC 160325 ||||||||| |||||||| || || || || || || ||||| ||||||| |||||||| Sbjct 82760 ATTTGAGACTTTCTACACAAA-AATATTCTCTTAAACGAAGGTATTCGTGCATGGATGGC 82818 Query 160326 ACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACC 160376 || ||||| || ||||||||| |||| ||||||||||| || ||||| Sbjct 82819 GACTATAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 82869 >seq134 Length=619377 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 158844 TACATTCTAGACGCTGCAGAAGAGGCAGGAGTTGATATTAACTATTCCTGTCGTGCTGGT 158903 ||||| |||| || ||||| | ||||||||||| || ||||| || ||||| ||| Sbjct 606834 TACATCTTAGATGCAGCAGAGAATGCAGGAGTTGAACTTCCATATTCGTGCCGTGCCGGT 606775 Query 158904 GCCTGTTCTTCCTGTGCTGGTAAACTTGTCAGCGGAACTGTTGACCAAAGCGATCAGTCA 158963 || || ||| |||||||||| || |||| || |||| || || ||| ||| Sbjct 606774 GCATGCTCTACCTGTGCTGGGAAGGTTGTTTCTGGTTCTGTGGATCAGTCTGATGGTTCA 606715 Query 158964 TTCTTGGATGATGATCAGATTGCAGAAGGATTTATCCTTACGTGTGTATCTTATCCCACT 159023 || | ||||| | ||| || | ||||| | | | || || ||||| | ||||| ||| Sbjct 606714 TTTCTTGATGACGGTCAAATGGAGGAAGGCTATGTGCTAACCTGTGTGGCGTATCCAACT 606655 Query 159024 TCTGATTGTGT 159034 || |||||||| Sbjct 606654 TCAGATTGTGT 606644 >seq2280 Length=21636 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 160280 ACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATCAAC 160339 ||||||| || || || || || ||||| ||||||| |||||||| || ||||| | Sbjct 263 ACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCGGCTCAAGATCAGC 204 Query 160340 CACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 | ||||||||| |||| ||||||||||| || ||||| | || ||||| || Sbjct 203 CTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572827567372800