Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq2319 398 9e-106 seq432 307 1e-78 seq1296 158 1e-33 seq318 122 1e-22 seq200 122 1e-22 seq134 104 3e-17 seq1868 100 3e-16 seq96 98.7 1e-15 seq145 89.7 6e-13 >seq2319 Length=57875 Score = 398 bits (440), Expect = 9e-106 Identities = 446/594 (75%), Gaps = 2/594 (0%) Strand=Plus/Minus Query 160359 CCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCC 160418 ||||| || || || |||| || ||| | | || || | ||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 160419 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 160478 |||| ||||||||| || |||||||||||||| |||| ||| ||||||| || || || Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 160479 CACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCT 160538 || ||||| |||||||||||||| |||||| | || || ||||| |||||||| || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 160539 TTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGA 160597 | ||| |||||||||||| | || ||||| | | | || | ||||| || || Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACTACAGA 18344 Query 160598 AACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGT 160657 || || || ||| | ||||| | ||||||||||||||||| ||||| || || || Sbjct 18343 AAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGT 18284 Query 160658 CGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCG 160717 || || |||||||| || || || |||||||||||||| || ||||||||||| || Sbjct 18283 AGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCG 18224 Query 160718 TTCACTTCACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGG 160777 ||| | || |||||||| || || ||||||||||| || |||||||| || || | || Sbjct 18223 TTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGG 18164 Query 160778 TGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGG 160837 | | || || ||||| ||||| | || || || || || ||||| ||| || | ||| Sbjct 18163 TATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTC 18104 Query 160838 TCAAGGTCGTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGA 160897 ||||||||||||| | ||||||||||| || | | || |||||| ||||||||||| Sbjct 18103 TCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 18044 Query 160898 AGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGCTGCTGA 160951 |||||||||||| |||||||| || || ||||| || ||||| ||||| | ||| Sbjct 18043 AGTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq432 Length=331984 Score = 307 bits (340), Expect = 1e-78 Identities = 390/534 (73%), Gaps = 2/534 (0%) Strand=Plus/Plus Query 161904 CATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCA 161962 |||||| || || || || ||||||||||| || || || ||||| ||| ||| || Sbjct 47490 CATTCT-TTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCA 47548 Query 161963 ACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCAT 162022 | | || || || |||| |||||| || || || ||||| |||| |||| || || || Sbjct 47549 ATTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTAT 47608 Query 162023 GCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTT 162082 | | ||||| |||||||| || || | || | || || || ||||| || || || Sbjct 47609 GTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGGCCTTATAATGCAATCGCATT 47668 Query 162083 CTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAG 162142 ||| ||||| |||||||||||||| || |||||||| || ||| |||||||||| | Sbjct 47669 CTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGG 47728 Query 162143 TTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCA 162202 |||||| || || || ||||| || ||||| || ||| ||||| | | ||| | || Sbjct 47729 TTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCA 47788 Query 162203 AGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGG 162262 ||| || ||||| ||||| | ||||| || ||||||||||||||||||||| || | || Sbjct 47789 AGGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGG 47848 Query 162263 TGGAGCACTTCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGG 162322 | || || ||| |||||||| || | || || |||||||| |||| || ||||| Sbjct 47849 CGCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGG 47908 Query 162323 AGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTAT 162382 || ||||| || || || ||| | | || || | |||||| |||||||| || Sbjct 47909 GGATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAAT 47968 Query 162383 GGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAA 162436 |||||| || |||||||| ||||| || ||||| || |||| ||||| || || Sbjct 47969 GGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq1296 Length=110557 Score = 158 bits (174), Expect = 1e-33 Identities = 178/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 160413 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 160472 || || |||| ||||||||| || |||||||||||||| |||| ||| ||||||| || Sbjct 75580 TTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAG 75521 Query 160473 GCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGT 160532 || || || ||||| |||||||||||||| |||||| | || || ||||| |||||||| Sbjct 75520 GCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 75461 Query 160533 GGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAAC 160591 || || | ||| |||||||||||| | || |||| || | | || | ||||| Sbjct 75460 GGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAAC 75402 Query 160592 GACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCT 160647 || |||| || || ||| | ||||| | ||||||||||||||||| |||| Sbjct 75401 TACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCT 75346 >seq318 Length=400206 Score = 122 bits (134), Expect = 1e-22 Identities = 163/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 160729 TCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCA 160788 ||||| | || || || |||||||| || |||||||| | | | ||| | || || Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTACTG 349152 Query 160789 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTG 160848 |||| ||||| | || | || || || ||||| ||| || | ||| ||||||||||| Sbjct 349153 TGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTG 349212 Query 160849 TACTGAACACCTGGGCAGACGTAC--TGAATCGTGCTGGTCTTGGTATGGAAGTTATGCA 160906 || | ||||| ||||| || ||| | || |||||| |||||||||||||||||||| Sbjct 349213 TAATTAACACTTGGGCTGA--TACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCA 349270 Query 160907 TGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGCTGCTGA 160951 | | |||||| | || || || || | || || ||||| | ||| Sbjct 349271 TAAACGTAACACTCATAATTTTCCTCCAGAGCTAGCTGCGGTTGA 349315 >seq200 Length=959787 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 162456 ATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCT 162515 ||||| ||||| || || | ||| |||||| || |||| | | ||||| || Sbjct 265389 ATGTTATTTGTCCCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCC 265330 Query 162516 CTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAG 162575 || ||||| ||||| || || ||||| ||| || ||| | ||||| ||||||||||| Sbjct 265329 CTGAACCTACGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 265270 Query 162576 TTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCA 162635 ||||| || |||||||| || || ||||| | || ||||| | ||||| ||| | || Sbjct 265269 TTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCG 265210 Query 162636 CCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCC 162685 || || || || ||||| ||| |||| ||||| || || ||||| || Sbjct 265209 GCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 265160 >seq134 Length=619377 Score = 104 bits (114), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| |||||||||||||| | ||||||||||| || ||||| || ||||| ||| Sbjct 606834 TACATCTTAGATGCAGCAGAGAATGCAGGAGTTGAACTTCCATATTCGTGCCGTGCCGGT 606775 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 || |||||| ||||||| || || || |||| ||| | || || |||||||| || Sbjct 606774 GCATGCTCTACCTGTGCTGGGAAGGTTGTTTCTGGTTCTGTGGATCAGTCTGATGGTTCA 606715 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305 || | ||||| | || || || || | | | || ||||| || ||||| ||| Sbjct 606714 TTTCTTGATGACGGTCAAATGGAGGAAGGCTATGTGCTAACCTGTGTGGCGTATCCAACT 606655 Query 161306 AGCGATTGTGTGATTCAAAC 161325 |||||||| ||||| || Sbjct 606654 TCAGATTGTGTTATTCATAC 606635 >seq1868 Length=44937 Score = 100 bits (110), Expect = 3e-16 Identities = 101/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 162357 ACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 162416 || || | |||||| |||||||| ||||||||||| |||||||| ||||| || ||||| Sbjct 39539 ACCCAAGCGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTT- 39597 Query 162417 GGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 162476 || |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | Sbjct 39598 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACT 39657 Query 162477 GGTCTATGGA 162486 ||| ||| || Sbjct 39658 GGTTTATTGA 39667 >seq96 Length=755957 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| |||||||||||||| | || |||||||| | ||||| || |||||||| Sbjct 745883 TACATCTTAGATGCAGCAGAGAATGCTGGAGTTGAACTCCCTTATTCGTGCCGTGCTGGA 745824 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 || |||||| | ||||| || || ||| |||| ||| |||| || ||||| || || Sbjct 745823 GCATGCTCTACTTGTGCTGGAAAGATTGTTTCTGGTTCAGTGGATCAGTCCGATGGCTCG 745764 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTACT 161305 || |||||||| | || || | || || | | || |||||| | ||||| || Sbjct 745763 TTTTTGGATGACAATCAACTTAAGGAAGGCTTTGTGCTTACCTGTGTTTCCTATCCAACC 745704 Query 161306 AGCGATTGTGTGATTCAAACTGAGCAAG--AGGAGAATCTGTACTGA 161350 || ||| ||| ||||| | |||| ||||||| || |||||| Sbjct 745703 GCAGACGTTGTAATTGAAACTCA-CAAGGAAGGAGAA-CTCTACTGA 745659 >seq145 Length=649883 Score = 89.7 bits (98), Expect = 6e-13 Identities = 121/169 (72%), Gaps = 5/169 (3%) Strand=Plus/Minus Query 160287 TATATGGGACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTA 160346 || ||||| ||| |||||||||| | ||||| ||||||||||| ||||| ||| Sbjct 132355 TACATGGGTCGTAAGTGGGAACTAAGTTTTCGTTTGGGTATGCGCCCTTGGATTGCTGTT 132296 Query 160347 GCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAA 160406 |||||||| |||||||| || | ||| | ||| | | ||||| | ||||| Sbjct 132295 GCATATTCAGCTCCAGTTACTACTGCA-----GTTTTTCTTAATCTATCCAATTGGTCAG 132241 Query 160407 GGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACT 160455 || || | |||| ||||||||| || |||||| ||||||| |||| Sbjct 132240 GGAAGCTTTTTAGATGGTATGCCTCTGGGAATCTCTAGTACTTTCAACT 132192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559312202028800