Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq2319 367 2e-96 seq432 286 4e-72 seq1296 165 1e-35 seq200 127 3e-24 seq2286 111 2e-19 seq814 111 2e-19 seq2312 107 2e-18 seq5156 102 1e-16 seq2162 102 1e-16 seq1868 102 1e-16 seq1196 102 1e-16 seq264 89.7 6e-13 seq237 89.7 6e-13 seq118 82.4 9e-11 >seq2319 Length=57875 Score = 367 bits (406), Expect = 2e-96 Identities = 437/593 (74%), Gaps = 0/593 (0%) Strand=Plus/Minus Query 181380 CCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 181439 ||||| ||||| || |||| || ||| | |||| || | ||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 181440 GACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAG 181499 || | ||||| || || ||||||||||| ||||||| ||| |||| || || || ||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 181500 CACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCA 181559 || || ||||| |||||||| || |||||||| ||||| || |||||||| || || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 181560 CTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAA 181619 || |||||||| ||||||||||| ||||| || ||| | || | || || || ||| Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 18343 Query 181620 ACTGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTC 181679 | ||| || ||| | ||||||| ||||| ||||| ||||| || || || || || Sbjct 18342 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 18283 Query 181680 GCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGT 181739 || || || ||||| ||||| || |||||||||||||| ||| ||||||||||| ||| Sbjct 18282 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGT 18223 Query 181740 TCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGC 181799 || | || |||||||| || || ||||||||||| || |||||||| ||||| | || Sbjct 18222 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGT 18163 Query 181800 GTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGA 181859 | || || ||||| || || | |||||||| || || ||||| || || | || Sbjct 18162 ATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCT 18103 Query 181860 CAAGGACGTGTCCTCAACACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAA 181919 ||||| ||||| | ||||||||||| || | | |||||||| || || |||||| Sbjct 18102 CAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 18043 Query 181920 GTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGCAGCTGA 181972 || ||||| || || ||||| || || ||||| || || || || || | ||| Sbjct 18042 GTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq432 Length=331984 Score = 286 bits (316), Expect = 4e-72 Identities = 389/537 (72%), Gaps = 8/537 (1%) Strand=Plus/Plus Query 182577 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAA 182636 |||||| | | |||| ||||||||||| | ||||| |||| || ||||| ||| Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 182637 CTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATG 182696 | || || || |||| ||| || ||||| |||||||| |||| | || ||||| ||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 182697 CTTAGGCAATTTGAACTTGCTCGC-CTGATTGGAATCAGACCTTACAATGCGATTGCTTT 182755 | | ||||||||||||||||| ||| || | | | ||||| ||||| || || || Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCTG-TTCAATTGCGGCCTTATAATGCAATCGCATT 47668 Query 182756 TTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCTTTGGGACAGTCCTC 182815 || ||||| |||||||| || || ||| ||||| || ||||| |||| ||||| Sbjct 47669 CTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGG 47728 Query 182816 TTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTC---CTGTTGTTCCT 182872 |||||| || || || |||||||| || || || || | ||| || || |||| Sbjct 47729 TTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCA 47788 Query 182873 TCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACT 182932 |||||||| | || |||||| | ||||| || ||||||||||||||||||||| || | Sbjct 47789 --AGGGTTTC-ATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATT 47845 Query 182933 GGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGA 182992 ||| | || || | | ||||| ||||| | || ||||| |||||||| | |||||| Sbjct 47846 GGGCGCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGA 47905 Query 182993 TGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTC 183052 ||| || ||||| ||||| || || | | || || | ||| || || ||||| Sbjct 47906 TGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTC 47965 Query 183053 GATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAA 183109 ||||| || || || || |||||||| |||||||| |||||||| ||| |||||| Sbjct 47966 AATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq1296 Length=110557 Score = 165 bits (182), Expect = 1e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 181446 ATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAAC 181505 ||||| || || ||||||||||| ||||||| ||| |||| || || || ||||| || Sbjct 75568 ATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAGCATAAT 75509 Query 181506 ATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTC 181565 ||||| |||||||| || |||||||| ||||| || |||||||| || || || || ||| Sbjct 75508 ATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTC 75449 Query 181566 AGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAG 181625 ||||| ||||||||||| ||||| || ||| | || | || || || |||| ||| Sbjct 75448 AGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAA 75389 Query 181626 TCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGAC 181666 || ||| | ||||||| ||||| ||||| ||||| || Sbjct 75388 TCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 75348 >seq200 Length=959787 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 183129 ATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCT 183188 ||||| ||||| || || | ||| | ||| | | || |||| | | || || || Sbjct 265389 ATGTTATTTGTCCCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCC 265330 Query 183189 CTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAG 183248 || || || ||||| ||||| || || |||||| || | ||||| ||||||||||| Sbjct 265329 CTGAACCTACGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 265270 Query 183249 TTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCA 183308 || ||||| |||||||| || || || || | || ||||| | ||||| ||| |||| Sbjct 265269 TTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCG 265210 Query 183309 CCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAAGAAGTTCTACC 183358 || ||||| || ||||||||| | || |||||||| || |||||||| Sbjct 265209 GCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 265160 >seq2286 Length=21248 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 183030 ACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTC 183089 || || | ||| || || ||||| ||||| || || || || |||||||| |||||||| Sbjct 6813 ACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 6754 Query 183090 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183149 |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | | Sbjct 6753 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACG 6694 Query 183150 GGTCTTTGG 183158 ||| | ||| Sbjct 6693 GGTTTATGG 6685 >seq814 Length=198837 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 183038 GGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGC 183097 ||| || || ||||| ||||| || || || || |||||||| |||||||| |||||||| Sbjct 115067 GGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGC 115126 Query 183098 GTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTG 183157 ||| |||||| |||||||| || ||||||||||| ||||| || || | |||| | || Sbjct 115127 TTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACGGGTTTATG 115186 Query 183158 G 183158 | Sbjct 115187 G 115187 >seq2312 Length=20438 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 183030 ACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTC 183089 || || | ||| || || ||||| ||||| || || || || |||||||| |||||||| Sbjct 19761 ACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 19702 Query 183090 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183149 |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | Sbjct 19701 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACA 19642 Query 183150 GGTCTTTGG 183158 ||| | ||| Sbjct 19641 GGTTTATGG 19633 >seq5156 Length=1562 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 183030 ACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTC 183089 || || | ||| || || ||||| |||| || || || || || ||||| ||||||||| Sbjct 921 ACCCAAGCGGAAGAAACTTATTCAGTGGTCACCGCTAACCGCTTATGGTCCCAAATCTTC 862 Query 183090 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183149 |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || | | | Sbjct 861 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAATAACG 802 Query 183150 GGTCTTTGG 183158 ||| | ||| Sbjct 801 GGTTTATGG 793 >seq2162 Length=26882 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 183030 ACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTC 183089 || || | |||||| || ||||| |||| || || || || |||||||| |||||||| Sbjct 20876 ACCCAAGCGGAGGAAACTTATTCATTGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 20935 Query 183090 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183149 |||||||| ||| |||||| ||||||| || ||||||||||| ||||| || || | Sbjct 20936 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACT 20995 Query 183150 GGTCTTTGG 183158 ||| | ||| Sbjct 20996 GGTTTATGG 21004 >seq1868 Length=44937 Score = 102 bits (112), Expect = 1e-16 Identities = 93/116 (80%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 183030 ACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTC 183089 || || | ||| || || ||||| ||||| || || || || |||||||| |||||||| Sbjct 39539 ACCCAAGCGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTT- 39597 Query 183090 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGT 183145 |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || Sbjct 39598 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGT 39653 >seq1196 Length=183224 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 183030 ACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTC 183089 || || | ||| || || ||||| ||||| || || || || |||||||| |||||||| Sbjct 19718 ACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 19659 Query 183090 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183149 |||||||| ||| |||||| ||||||| || ||||||||||| ||||| | || | | Sbjct 19658 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTCCGAGTAACG 19599 Query 183150 GGTCTTTGG 183158 ||| | ||| Sbjct 19598 GGTTTATGG 19590 >seq264 Length=551193 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 181526 CATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTT 181585 || ||| ||||| || |||||||| || || || || |||||||| ||||||||||| || Sbjct 291911 CACGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTCCTT 291970 Query 181586 GGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAA 181645 ||| || ||| | || | || || || |||| ||| || ||| | ||||||| Sbjct 291971 GGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGAAGGTTACAG 292030 Query 181646 GTTCGGACAAGAAGAAGAGACATACAA 181672 ||||| ||||| ||||| || || || Sbjct 292031 ATTCGGTCAAGAGGAAGAAACCTAAAA 292057 >seq237 Length=511443 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 183060 ACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTG 183119 || || || || |||||||| |||||||| |||||||| ||| |||||| |||||||| Sbjct 122087 ACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 122028 Query 183120 CACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGG 183158 || ||||||||||| ||||| || || | ||| | ||| Sbjct 122027 CATTTCTTTATGTTATTTGTCCCGGTAACTGGTTTATGG 121989 >seq118 Length=706494 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 183066 AATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTC 183125 || || |||||||| |||||||| ||||||| ||| |||||| |||||||| || ||| Sbjct 215305 AACCGCTTTTGGTCCCAAATCTTTAGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTC 215246 Query 183126 TTTATGTTGTTTGTTCCTGTCATGGGTCTTTGG 183158 |||||||| ||||| || || | ||| | ||| Sbjct 215245 TTTATGTTATTTGTCCCAGTAACTGGTTTATGG 215213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614406909086720