Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq2319 325 6e-84 seq432 289 4e-73 seq219 123 4e-23 seq2286 116 5e-21 seq814 114 2e-20 seq5156 111 2e-19 seq2312 111 2e-19 seq1868 111 2e-19 seq1196 107 3e-18 seq200 104 3e-17 seq2162 98.7 1e-15 seq237 89.7 8e-13 seq318 84.2 3e-11 >seq2319 Length=57875 Score = 325 bits (360), Expect = 6e-84 Identities = 421/579 (73%), Gaps = 2/579 (0%) Strand=Plus/Minus Query 174867 CCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCA 174926 ||||||||||| ||| | ||||| ||| | |||| || | ||||| || || ||| Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 174927 GACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGTCTTCCAAGCAGAA 174986 || | ||||| | || |||||||| || ||||||| ||| | || || || || || Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 174987 CATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCA 175046 ||||| || | ||||| || || |||||||| || || || ||||| ||||| || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 175047 TTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTG-TCCGTGAGACAACTGA 175105 | ||| || ||||| ||||| |||| || || | ||| || | || || || || Sbjct 18402 CTATTCAGTGCTATGCACGGTTC-CTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGA 18344 Query 175106 AACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGACCTATAACATCGT 175165 || ||| || ||| | ||||||| ||||| ||||| ||||| |||||||| || || Sbjct 18343 AAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGT 18284 Query 175166 GGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACG 175225 || || ||||| || || || || |||||||||||||||||| ||||||||||| || Sbjct 18283 AGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCG 18224 Query 175226 CTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGG 175285 || | || |||||| |||| || ||||| || || ||||||||||| ||||| | || Sbjct 18223 TTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGG 18164 Query 175286 TGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGG 175345 | | || ||||| ||||| | ||||| || || || ||||| || || | || Sbjct 18163 TATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTC 18104 Query 175346 ACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGA 175405 |||||| | ||| | ||||||||||| ||| || ||||| | ||| ||||| ||||| Sbjct 18103 TCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 18044 Query 175406 AGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGA 175444 ||| |||||||| | || || || || ||||| ||||| Sbjct 18043 AGTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGA 18005 >seq432 Length=331984 Score = 289 bits (320), Expect = 4e-73 Identities = 384/533 (72%), Gaps = 0/533 (0%) Strand=Plus/Plus Query 176067 CATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAA 176126 |||||| | | |||| |||||||||||| | ||||| || || || ||| ||| Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 176127 CTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATG 176186 | || || || ||| | ||||||||||| |||||||| |||| | || || || ||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 176187 CTTCGTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTCCCTACAACGCTATTGCATTC 176246 | ||||| |||||||| || || || | || || || || || || |||||| Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGGCCTTATAATGCAATCGCATTC 47669 Query 176247 AGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCC 176306 ||||| || ||||| ||||| ||| || ||| | || ||||| ||||| ||| Sbjct 47670 TCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGGT 47729 Query 176307 TGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAG 176366 ||||||||||| || |||||||| ||||| || ||| ||||| | | ||| | || Sbjct 47730 TGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCAA 47789 Query 176367 GGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGT 176426 || || || || |||||| | ||||| || ||||||||||||||||||||| || | || Sbjct 47790 GGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGGC 47849 Query 176427 GGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGA 176486 | || ||| ||| || || ||||||| ||| || ||||||||| ||| ||||||||| Sbjct 47850 GCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGGG 47909 Query 176487 GAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATG 176546 || || || ||| ||| || | | || || | |||||| || ||||| ||| Sbjct 47910 GATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATG 47969 Query 176547 GTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAA 176599 || || || |||||||| ||||| |||||||| |||||||| ||| ||||| Sbjct 47970 GTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq219 Length=535087 Score = 123 bits (136), Expect = 4e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 174510 GGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACTGTATGT-TTCATTAT 174568 || ||||| |||||| | ||||| ||||| || || |||||||| | ||| || ||||| Sbjct 252280 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTAT 252222 Query 174569 CGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGAACCAGTAGCTGGTTC 174628 ||||||| | | ||| || || || || || || || || ||||| || || |||| || Sbjct 252221 CGCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATC 252162 Query 174629 ACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGG 174688 || | || |||||||| || || || ||||| || |||||| ||| || || || Sbjct 252161 TCTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGCGGCTATTGG 252102 Query 174689 TCTACACTTCTACCCAATCTGGGAAGCAGC 174718 | | ||||| ||||| || |||||||| || Sbjct 252101 TTTGCACTTTTACCCGATATGGGAAGCTGC 252072 >seq2286 Length=21248 Score = 116 bits (128), Expect = 5e-21 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 176520 ACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTC 176579 || || | |||||| || ||||| ||||| || || |||||||| ||||| |||||||| Sbjct 6813 ACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 6754 Query 176580 GGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATG 176639 |||||||| ||| ||||| |||||| | || ||||||||||| |||||||| || | | Sbjct 6753 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACG 6694 Query 176640 GGTCTTTGG 176648 ||| | ||| Sbjct 6693 GGTTTATGG 6685 >seq814 Length=198837 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 176528 GGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGC 176587 |||||| || ||||| ||||| || || |||||||| ||||| |||||||| |||||||| Sbjct 115067 GGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGC 115126 Query 176588 GTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTG 176647 ||| ||||| |||||| | || ||||||||||| |||||||| || | |||| | || Sbjct 115127 TTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACGGGTTTATG 115186 Query 176648 G 176648 | Sbjct 115187 G 115187 >seq5156 Length=1562 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 176520 ACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTC 176579 || || | |||||| || ||||| |||| || || |||||||| ||||| ||||||||| Sbjct 921 ACCCAAGCGGAAGAAACTTATTCAGTGGTCACCGCTAACCGCTTATGGTCCCAAATCTTC 862 Query 176580 GGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATG 176639 |||||||| ||| ||||| |||||| | || ||||||||||| |||||||| | | | Sbjct 861 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAATAACG 802 Query 176640 GGTCTTTGG 176648 ||| | ||| Sbjct 801 GGTTTATGG 793 >seq2312 Length=20438 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 176520 ACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTC 176579 || || | |||||| || ||||| ||||| || || |||||||| ||||| |||||||| Sbjct 19761 ACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 19702 Query 176580 GGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATG 176639 |||||||| ||| ||||| |||||| | || ||||||||||| |||||||| || | Sbjct 19701 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACA 19642 Query 176640 GGTCTTTGG 176648 ||| | ||| Sbjct 19641 GGTTTATGG 19633 >seq1868 Length=44937 Score = 111 bits (122), Expect = 2e-19 Identities = 95/116 (82%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 176520 ACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTC 176579 || || | |||||| || ||||| ||||| ||||| |||||||| ||||| |||||||| Sbjct 39539 ACCCAAGCGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTT- 39597 Query 176580 GGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGT 176635 |||||||| ||| ||||| |||||| | || ||||||||||| |||||||| || Sbjct 39598 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGT 39653 >seq1196 Length=183224 Score = 107 bits (118), Expect = 3e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 176520 ACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTC 176579 || || | |||||| || ||||| ||||| || || |||||||| ||||| |||||||| Sbjct 19718 ACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 19659 Query 176580 GGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATG 176639 |||||||| ||| ||||| ||||| | || ||||||||||| ||||||| || | | Sbjct 19658 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTCCGAGTAACG 19599 Query 176640 GGTCTTTGG 176648 ||| | ||| Sbjct 19598 GGTTTATGG 19590 >seq200 Length=959787 Score = 104 bits (114), Expect = 3e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 176619 ATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCT 176678 ||||| |||||||| || | ||| | ||| | | |||| | | || || || Sbjct 265389 ATGTTATTTGTCCCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCC 265330 Query 176679 CTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAG 176738 || || || ||||| ||||| || || ||||| || | ||||| ||||||||||| Sbjct 265329 CTGAACCTACGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 265270 Query 176739 TTTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCA 176798 ||||| ||||||||||| || || || || | |||||||| | | || |||||||| Sbjct 265269 TTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCG 265210 Query 176799 CCTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACC 176848 || ||||| || ||||| || ||||||| || || |||||||| Sbjct 265209 GCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 265160 >seq2162 Length=26882 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 176520 ACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTC 176579 || || | ||| || || ||||| |||| || || |||||||| ||||| |||||||| Sbjct 20876 ACCCAAGCGGAGGAAACTTATTCATTGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 20935 Query 176580 GGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATG 176639 |||||||| ||| ||||| ||||| | || ||||||||||| |||||||| || | Sbjct 20936 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACT 20995 Query 176640 GGTCTTTGG 176648 ||| | ||| Sbjct 20996 GGTTTATGG 21004 >seq237 Length=511443 Score = 89.7 bits (98), Expect = 8e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 176550 ACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTT 176609 || || |||||||| ||||| |||||||| |||||||| ||| ||||| |||||| | Sbjct 122087 ACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 122028 Query 176610 CACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGG 176648 || ||||||||||| |||||||| || | ||| | ||| Sbjct 122027 CATTTCTTTATGTTATTTGTCCCGGTAACTGGTTTATGG 121989 >seq318 Length=400206 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 175237 TCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAA 175296 |||||||||| || || || || || ||||||||||| | || | ||| | || Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTACTG 349152 Query 175297 TGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAG 175356 |||| ||||| | ||| | || || || ||||| || || | || |||||| | | Sbjct 349153 TGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTG 349212 Query 175357 TATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCAT 175415 || | ||||| ||||| ||| | ||||| | ||| ||||| |||||||| |||||| Sbjct 349213 TAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCAT 349271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729679380133120