Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq2319 361 7e-95 seq432 280 2e-70 seq1296 161 1e-34 seq200 114 2e-20 seq1868 98.7 1e-15 seq177 96.9 4e-15 seq264 89.7 6e-13 >seq2319 Length=57875 Score = 361 bits (400), Expect = 7e-95 Identities = 436/593 (74%), Gaps = 0/593 (0%) Strand=Plus/Minus Query 178248 CCAGTAGCAGCAGCATCGGCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCT 178307 ||||| ||||| || | ||||| ||| || |||| || | ||||| || ||||| Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 178308 GACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAA 178367 || | ||||| || || ||||||||||| ||||||| ||| |||| || || || || Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 178368 CACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCA 178427 || || ||||| ||||| || || |||||||| ||||| || ||||||||||| || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 178428 CTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAA 178487 || |||||||| ||||||||||| ||||| || ||| | | | ||||| || ||| Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 18343 Query 178488 ACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTT 178547 | ||||| ||| | ||||| | ||||| ||||| ||||| || || || || || Sbjct 18342 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 18283 Query 178548 GCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGT 178607 || || ||||| || || || || |||||||||||||| ||| ||||||||||| ||| Sbjct 18282 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGT 18223 Query 178608 TCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGC 178667 || | || |||||||| || || ||||||||||| || |||||||| ||||| | || Sbjct 18222 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGT 18163 Query 178668 GTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGA 178727 | || || ||||| || || | |||||||| || || ||||| ||| || | || Sbjct 18162 ATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCT 18103 Query 178728 CAAGGACGTGTCCTCAACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAA 178787 ||||| ||||| | ||||| ||||| || | | |||||||| || || |||||| Sbjct 18102 CAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 18043 Query 178788 GTCATGCACGAGCGCAACGCGCACAACTTCCCGCTTGATCTTGCAGCAGCTGA 178840 || ||||| || || ||||| || || ||||| || || || || || | ||| Sbjct 18042 GTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq432 Length=331984 Score = 280 bits (310), Expect = 2e-70 Identities = 384/534 (72%), Gaps = 2/534 (0%) Strand=Plus/Plus Query 179439 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCCAA 179498 |||||| | | |||| ||||||||||| | ||||| |||| || ||||| ||| Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 179499 CTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATG 179558 | || || || |||| ||| || ||||| |||||||| |||| | || ||||| ||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 179559 CTTAGGCAATTTGAACTTGCTCGC-CTGATTGGTATCAGACCTTACAATGCGATTGCTTT 179617 | | ||||||||||||||||| ||| | | | | ||||| ||||| || || || Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGG-CCTTATAATGCAATCGCATT 47668 Query 179618 TTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTC 179677 || ||||| |||||||| || || ||| ||||| || ||||| |||| ||||| Sbjct 47669 CTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGG 47728 Query 179678 TTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCA 179737 |||||| || || || |||||||| || || || || | ||| | || || | || Sbjct 47729 TTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCA 47788 Query 179738 GGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGG 179797 || || || || ||||| | ||||| || ||||||||||||||||||||| || | || Sbjct 47789 AGGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGG 47848 Query 179798 AGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGG 179857 | || || | | ||||| ||||| | ||| ||||| ||||| || | ||||||||| Sbjct 47849 CGCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGG 47908 Query 179858 AGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTAT 179917 || |||||||| || || ||| | | || || | ||||| |||||||| || Sbjct 47909 GGATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAAT 47968 Query 179918 GGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAA 179971 |||||| || |||||||| ||||| || ||||| || |||| ||||| || || Sbjct 47969 GGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq1296 Length=110557 Score = 161 bits (178), Expect = 1e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 178301 ATTTTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAACTACATGCTTGTTTTCCA 178360 |||||| || | ||||| || || ||||||||||| ||||||| ||| |||| || || Sbjct 75581 ATTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCA 75522 Query 178361 AGCAGAACACAACATTCTGATGCACCCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGG 178420 || || || || ||||| ||||| || || |||||||| ||||| || ||||||||||| Sbjct 75521 GGCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGG 75462 Query 178421 TGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTTCGTGAAAC 178480 || || || |||||||| ||||||||||| ||||| || ||| | | | ||||| Sbjct 75461 CGGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAAC 75402 Query 178481 GACTGAAACAGAATCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGAC 178534 || |||| ||||| ||| | ||||| | ||||| ||||| ||||| || Sbjct 75401 TACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 75348 >seq200 Length=959787 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 179991 ATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCT 180050 ||||| ||||| || || | ||| |||||| || |||| | | ||||| || Sbjct 265389 ATGTTATTTGTCCCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCC 265330 Query 180051 CTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAG 180110 || ||||| ||||| || || ||||| ||| || ||| | ||||| |||||||| || Sbjct 265329 CTGAACCTACGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 265270 Query 180111 TTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCA 180170 |||||||| ||||||||||| || ||||| | || ||||| | ||||| ||| |||| Sbjct 265269 TTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCG 265210 Query 180171 CCAGTTGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCCA 180221 | ||||| || ||||| | ||||||| || || ||||| ||| Sbjct 265209 GCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 265159 >seq1868 Length=44937 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/121 (79%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 179901 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCA 179960 ||||| |||||||| ||||||||||| |||||||| ||||| || ||||| || |||| Sbjct 39548 GAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTT-GGGGTTGCT 39606 Query 179961 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGG 180020 ||||| || || || ||| | ||||| || ||||| ||||| || || | ||| ||| | Sbjct 39607 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACTGGTTTATTG 39666 Query 180021 A 180021 | Sbjct 39667 A 39667 >seq177 Length=575278 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 176387 TTACTCTTGTCGTGCTGGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGT 176446 |||||| || | |||||| ||||||| ||||||||||| ||| | | | |||| ||| Sbjct 226744 TTACTCATGCAGAGCTGGTTCTTGTTCTTCTTGTGCTGGTAAAGTTGTTAATGGTGGTGT 226803 Query 176447 TGATCAGAGTGATCAGTCTTTCCTGGATGATGATCAAATTGAATCTGGTTTTATTCTGAC 176506 | ||||| ||| |||||||| |||||||| ||||||||| |||| |||| || Sbjct 226804 TAATCAGGAAGATGGTTCTTTCCTTGATGATGACCAAATTGAAGAAGGTTGGGTTCTTAC 226863 Query 176507 TTGCGTATCTTATCCTAC 176524 ||| || |||| ||||| Sbjct 226864 TTGTGTTGCTTACCCTAC 226881 >seq264 Length=551193 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 178394 CATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTT 178453 || ||| ||||| || ||||||||||| || || || |||||||| ||||||||||| || Sbjct 291911 CACGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTCCTT 291970 Query 178454 GGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATGGTTATAA 178513 ||| || ||| | | | ||||| || |||| ||||| ||| | ||||| | Sbjct 291971 GGTAACTTCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGAAGGTTACAG 292030 Query 178514 GTTCGGACAAGAAGAAGAGACATACAA 178540 ||||| ||||| ||||| || || || Sbjct 292031 ATTCGGTCAAGAGGAAGAAACCTAAAA 292057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605801859909120