Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq2319 399 2e-106 seq432 297 2e-75 seq1296 145 8e-30 seq200 116 4e-21 seq318 107 2e-18 seq1868 95.1 1e-14 >seq2319 Length=57875 Score = 399 bits (442), Expect = 2e-106 Identities = 449/596 (75%), Gaps = 6/596 (1%) Strand=Plus/Minus Query 158778 CCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCC 158837 ||||| || || || |||| || ||| | |||| || | ||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 158838 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 158897 |||| ||||||||| || |||||||||||||| |||| ||| ||||||| || || || Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 158898 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCT 158957 || || || |||||||| ||||| || ||| | ||||| ||||| |||||||| || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 158958 CTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGA 159016 || ||| ||||||||| || | || ||||| | | | || | ||||| || || Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACTACAGA 18344 Query 159017 AACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGT 159076 || || || ||| | ||||||| ||||| ||||| |||||||| |||||||| || Sbjct 18343 AAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGT 18284 Query 159077 CGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCG 159136 || || |||||||| || || || |||||||||||||||||| ||||||||||| || Sbjct 18283 AGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCG 18224 Query 159137 TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGG 159196 ||| || || |||||||| ||||| |||||||| || || |||||||| ||||| | || Sbjct 18223 TTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGG 18164 Query 159197 CGTGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGAT 159254 | ||| || ||||| ||||| | || || || || || ||||| ||| || ||||| Sbjct 18163 --TATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGAT 18106 Query 159255 GGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATG 159314 ||| |||||||| | ||||||||||| ||| | | |||||||| || |||||| Sbjct 18105 TCTCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATG 18046 Query 159315 GAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 159370 |||||||||||||| |||||||| || || ||||| || ||||| ||||| | ||| Sbjct 18045 GAAGTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq432 Length=331984 Score = 297 bits (328), Expect = 2e-75 Identities = 390/535 (73%), Gaps = 4/535 (1%) Strand=Plus/Plus Query 160115 CATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCA 160173 |||||| || || || || ||||||||||| || || || ||||| | | ||| || Sbjct 47490 CATTCT-TTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCA 47548 Query 160174 ACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCAT 160233 | | || || || |||| |||||| || || || ||||| |||| |||| || || || Sbjct 47549 ATTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTAT 47608 Query 160234 GCTCCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGT 160292 | | ||||| |||||||| || || ||| || | | || ||||| ||||| || || | Sbjct 47609 GTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGCAATCGCAT 47667 Query 160293 TCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCA 160352 |||| ||||| |||||||| ||||| |||||||| || || ||| |||||||||| Sbjct 47668 TCTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTG 47727 Query 160353 GTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTC 160412 ||||||| || || || ||||| || ||||| || ||| ||||| | | || | | Sbjct 47728 GTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCC 47787 Query 160413 AAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAG 160472 |||| ||||| || ||||| | ||||| || ||||||||||||||||||||| || | | Sbjct 47788 AAGGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGG 47847 Query 160473 GAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATG 160532 | | || || | | || || ||||||| ||| ||||| || || | | |||||||| Sbjct 47848 GCGCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATG 47907 Query 160533 GAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTA 160592 | || |||||||| || || ||| | | || || | ||||| |||||||| | Sbjct 47908 GGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAA 47967 Query 160593 TGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAA 160647 ||||||| || |||||||| ||||| || ||||| || |||| ||||| || || Sbjct 47968 TGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq1296 Length=110557 Score = 145 bits (160), Expect = 8e-30 Identities = 177/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 158832 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 158891 || || |||| ||||||||| || |||||||||||||| |||| ||| ||||||| || Sbjct 75580 TTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAG 75521 Query 158892 GCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 158951 || || || || || |||||||| ||||| || ||| | ||||| ||||| |||||||| Sbjct 75520 GCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 75461 Query 158952 GGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAAC 159010 || || || ||| ||||||||| || | || |||| || | | || | ||||| Sbjct 75460 GGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAAC 75402 Query 159011 GACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATA 159069 || |||| || || ||| | ||||||| ||||| ||||| |||||||| | || Sbjct 75401 TACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTNTA 75343 >seq200 Length=959787 Score = 116 bits (128), Expect = 4e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 160718 GGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAA 160777 ||||| || || || || ||||| || || ||||| |||||| || | ||||| ||| Sbjct 265338 GGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAA 265279 Query 160778 GATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCA 160837 ||||| ||||||||||| ||||||||||| || || || | || ||||| | ||||| Sbjct 265278 GATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCG 265219 Query 160838 TGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCC 160896 ||| | || || || || || ||||| ||| |||| ||||| || || ||||| || Sbjct 265218 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 265160 >seq318 Length=400206 Score = 107 bits (118), Expect = 2e-18 Identities = 160/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 159148 TCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCA--AC 159205 ||||| | ||||| || ||||| || || |||||||| | || | || | ||| || Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGG--TATCAGTAC 349150 Query 159206 CATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCG 159265 |||| ||||| | || | || || || ||||| ||| || ||||| ||| ||||| Sbjct 349151 TGTGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCG 349210 Query 159266 TGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCA 159325 ||| | ||||| ||||| ||| | |||||||| || ||||||||||||||||| Sbjct 349211 TGTAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCA 349270 Query 159326 TGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 159370 | | |||||| | || || || || | || || ||||| | ||| Sbjct 349271 TAAACGTAACACTCATAATTTTCCTCCAGAGCTAGCTGCGGTTGA 349315 >seq1868 Length=44937 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 160577 GAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCG 160636 ||||| |||||||| ||||||||||| |||||||| ||||| || ||||| || |||| Sbjct 39548 GAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTT-GGGGTTGCT 39606 Query 160637 TTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGT 160683 ||||| || || || ||| | ||||| || ||||| ||||| || || Sbjct 39607 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGT 39653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552284212049920