Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq2319 369 4e-97 seq432 325 5e-84 seq1296 150 2e-31 seq200 147 3e-30 seq81 105 8e-18 seq78 105 8e-18 seq2162 104 3e-17 seq1868 104 3e-17 seq318 98.7 1e-15 seq26 84.2 3e-11 >seq2319 Length=57875 Score = 369 bits (408), Expect = 4e-97 Identities = 450/609 (74%), Gaps = 6/609 (1%) Strand=Plus/Minus Query 179260 CCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 179319 ||||| || ||||| | |||||| ||| | |||| || | ||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 179320 GATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAA 179379 |||| ||||||||| || |||||||||||||| |||| ||| ||||||| || || || Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 179380 CACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCT 179439 || || || |||||||| ||||| || ||| | ||||| ||||| |||||||| || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 179440 CTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGA 179498 || ||| |||||||||||| | || ||||| | | ||| || | ||||| || || Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACTACAGA 18344 Query 179499 GACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGT 179558 | || || ||| | ||||| | ||||| ||||| ||||| |||||||| || || Sbjct 18343 AAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGT 18284 Query 179559 CGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACG 179618 || || ||||| || || || || |||||||||||||| || || |||||||| || Sbjct 18283 AGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCG 18224 Query 179619 CTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGG 179678 ||||| || |||||||| ||||| ||||| || || || |||||||| || || | || Sbjct 18223 TTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGG 18164 Query 179679 CGTGTCA--ACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGAC 179736 | ||| || ||||| ||||| | || || || || || ||||| ||| || |||| Sbjct 18163 --TATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGAT 18106 Query 179737 GGTCAAGGACGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATG 179796 |||||| ||||| ||||||| ||||| || | | |||||||| | |||||| Sbjct 18105 TCTCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATG 18046 Query 179797 GAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGAGTCT 179856 |||||||||||||| |||||||| || || ||||| || ||||| ||||| | ||| || Sbjct 18045 GAAGTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGAAGCT 17986 Query 179857 ACACCTGTA 179865 || || || Sbjct 17985 CCATCTATA 17977 >seq432 Length=331984 Score = 325 bits (360), Expect = 5e-84 Identities = 392/533 (74%), Gaps = 0/533 (0%) Strand=Plus/Plus Query 180237 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTGGTGCCAA 180296 |||||| | | |||| ||||||||||| | ||||| |||| || ||||| ||| Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 180297 CTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATG 180356 | || || || |||| ||| || ||||| |||||||| |||| |||| || |||||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 180357 CTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTATTGCATTC 180416 |||| || |||||||| || || | || | || ||||| ||||| || |||||| Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGGCCTTATAATGCAATCGCATTC 47669 Query 180417 TCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGT 180476 || ||||| || ||||| ||||| ||||| || || || |||||||||||||| || Sbjct 47670 TCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGGT 47729 Query 180477 TGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAG 180536 ||||||||||| || |||||| |||||||| || ||| ||||| | |||||| | || Sbjct 47730 TGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCAA 47789 Query 180537 GGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGT 180596 || || || || ||||| | ||||| || ||||||||||||||||||||| || | || Sbjct 47790 GGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGGC 47849 Query 180597 GGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGA 180656 | || | ||| || || ||||||| || || || || || | | ||||||||| Sbjct 47850 GCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGGG 47909 Query 180657 GAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATG 180716 || ||||| || || || ||| | |||| |||| ||| |||||||| || ||| Sbjct 47910 GATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATG 47969 Query 180717 GTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAA 180769 ||||| || |||||||| ||||| || ||||| || |||| ||||| || || Sbjct 47970 GTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq1296 Length=110557 Score = 150 bits (166), Expect = 2e-31 Identities = 178/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 179314 TTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 179373 || || |||| ||||||||| || |||||||||||||| |||| ||| ||||||| || Sbjct 75580 TTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAG 75521 Query 179374 GCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGT 179433 || || || || || |||||||| ||||| || ||| | ||||| ||||| |||||||| Sbjct 75520 GCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 75461 Query 179434 GGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAAC 179492 || || || ||| |||||||||||| | || |||| || | ||| || | ||||| Sbjct 75460 GGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAAC 75402 Query 179493 AACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATA 179551 || || | || || ||| | ||||| | ||||| ||||| ||||| |||| || Sbjct 75401 TACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTNTA 75343 >seq200 Length=959787 Score = 147 bits (162), Expect = 3e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 180789 ATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCT 180848 ||||| ||||| || || | ||| |||||| || |||| | | ||||| || Sbjct 265389 ATGTTATTTGTCCCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCC 265330 Query 180849 CTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAG 180908 || ||||| ||||| || || ||||| |||||| ||| | ||||| ||||||||||| Sbjct 265329 CTGAACCTACGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 265270 Query 180909 TTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCA 180968 || ||||| ||||||||||| || || || || || ||||| | ||||| ||| |||| Sbjct 265269 TTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCG 265210 Query 180969 CCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCA 181019 || ||||| || || |||||| | || |||||||| || ||||||||| Sbjct 265209 GCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 265159 >seq81 Length=695010 Score = 105 bits (116), Expect = 8e-18 Identities = 109/140 (78%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 180393 CGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATT-TGTCAGC-GTATTTC 180450 || ||||| ||| | || |||||||| |||| || ||||| || | || | ||||||| Sbjct 211507 CGGCCTTATAATACAATCGCATTCTCCAGTCCAATTGCTGTTTTATTTCTTCTGTATTTC 211566 Query 180451 TCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAA 180510 || || |||||||||||||| |||||||||||||| || |||||| ||| |||| | Sbjct 211567 ATATTTATCCACTGGGTCAGTCTAGTTGGTTCTTTGCACCTAGTTTTGGTGTAACAGCTA 211626 Query 180511 TCTTTAGATTCCTACTCTTT 180530 | ||| ||||| | |||||| Sbjct 211627 TATTTCGATTCATTCTCTTT 211646 >seq78 Length=963227 Score = 105 bits (116), Expect = 8e-18 Identities = 156/213 (73%), Gaps = 11/213 (5%) Strand=Plus/Plus Query 177348 CCAGATGGAACTGAAGAGTCCTTCCCTTGTGAAGACGATCAGTACATCCTCGACGCCGCT 177407 |||||||||||| |||| | | | ||| || ||||||||||| || || | || Sbjct 249436 CCAGATGGAACTAAAGAAT---TTACATGTCCAGGTGATCAGTACATTCTTGATGTAGCA 249492 Query 177408 GAAGAAGCAGGTGTTGATATTAATTACTCATGCCGCGCTGGTGCTTGTTCATCCTGTGCT 177467 |||||| ||| |||| || |||||||||| | |||||||||||||| || |||||| Sbjct 249493 GAAGAACAAGGCATTGACCTTCCTTACTCATGCAGGGCTGGTGCTTGTTCTTCATGTGCT 249552 Query 177468 GGTAAACTTGAG--AGTGGTAGTGTAGATCAAAGCGATCAATCG-TTCTTGGATGACGAT 177524 || ||| ||| | || || |||| ||| | ||| ||| | ||| | ||||||||| Sbjct 249553 GGAAAAGTTGTGGAAGGGGAAGTG--GATAATTCAGAT-AATAGCTTCCTTGATGACGAT 249609 Query 177525 CAAATGGAGTC-AGGATTTATTCTGACCTGTGT 177556 | ||| |||| ||| ||| |||| || ||||| Sbjct 249610 C-AATTAAGTCAAGGGTTTGTTCTAACATGTGT 249641 >seq2162 Length=26882 Score = 104 bits (114), Expect = 3e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 180688 CAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 180747 |||| |||| |||||||||||| || ||||||| || |||||||| ||||| || |||| Sbjct 20874 CAACCCAAGCGGAGGAAACTTATTCATTGGTCACCGCTAACCGCTTTTGGTCCCAAATCT 20933 Query 180748 TCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTA 180807 | || |||| ||||| || || | ||| | ||||| || ||||| ||||| || || | Sbjct 20934 TTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAA 20993 Query 180808 TGGGTCTATGGA 180819 ||| |||||| Sbjct 20994 CTGGTTTATGGA 21005 >seq1868 Length=44937 Score = 104 bits (114), Expect = 3e-17 Identities = 103/132 (78%), Gaps = 1/132 (1%) Strand=Plus/Plus Query 180688 CAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 180747 |||| |||| ||| |||||||| || ||||||||||| |||||||| ||||| || |||| Sbjct 39537 CAACCCAAGCGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCT 39596 Query 180748 TCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTA 180807 | || |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | Sbjct 39597 T-GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAA 39655 Query 180808 TGGGTCTATGGA 180819 ||| ||| || Sbjct 39656 CTGGTTTATTGA 39667 >seq318 Length=400206 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 179630 TCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCA--AC 179687 ||||| | ||||| || || || || || |||||||| | | | || | || ||| || Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCG-TGTTAG-GTATCAGTAC 349150 Query 179688 CATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACG 179747 |||| ||||| | || | || || || ||||| ||| || |||| |||||| || Sbjct 349151 TGTGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCG 349210 Query 179748 TGTCCTTAACACATGGGCGGACG-TATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGC 179806 ||| ||||||| ||||| || |||| |||||||| | |||||||||||||||| Sbjct 349211 TGTAATTAACACTTGGGCTGATACTATT-AACCGTGCTAACCTTGGTATGGAAGTTATGC 349269 Query 179807 ATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 179852 || | |||||| | || || || || | || || ||||| | ||| Sbjct 349270 ATAAACGTAACACTCATAATTTTCCTCCAGAGCTAGCTGCGGTTGA 349315 >seq26 Length=132285 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 180893 AGCAGAAGATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACT 180952 ||| |||||||||| || ||||| ||||||||||| || || || || |||||||| | Sbjct 33083 AGCGGAAGATCCTGGATTTGAGACTTTCTACACCAAAAATATTCTCTTAAATGAAGGTAT 33024 Query 180953 ACGTGCATGGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGT 181012 ||||| ||| ||| || |||| || || |||||| | || |||||||| || || Sbjct 33023 TCGTGCGTGGACGGCGGCTCAAGATCTGCCTCATGAAAACCTTATGTTCCCTGAGGAGGT 32964 Query 181013 T 181013 | Sbjct 32963 T 32963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610120379013120