Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq520 260 2e-64 seq1210 250 3e-61 seq92 111 2e-19 >seq520 Length=294854 Score = 260 bits (288), Expect = 2e-64 Identities = 581/871 (67%), Gaps = 6/871 (1%) Strand=Plus/Plus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| || ||||| |||||||| ||||| ||||| |||||||| || | | ||| || Sbjct 261801 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAATCAA 261860 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 |||||| ||||||| ||||| ||||||| ||||| | | || | ||| | Sbjct 261861 TTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTTCCACAACCAAGTTCACCCAA 261920 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 |||||||| |||||||| || || ||| |||||| |||| |||||||| | | Sbjct 261921 TAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAACCAA 261980 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 | || || || || | ||| ||| | || || || || || || | || Sbjct 261981 AGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGAACAAT 262040 Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624 | | | || ||| ||||| || | ||| | | | | ||| || || || Sbjct 262041 AGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCAAA 262100 Query 39625 GTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT 39684 |||||||| || || || || | ||| | ||||| ||||| || | |||||||| Sbjct 262101 ATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCAT 262160 Query 39685 TAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTC 39744 || |||||| ||||| |||||||| || | | ||| || || || || || ||||| Sbjct 262161 TAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACTACCGGAGAAAAATATACCTTC 262220 Query 39745 TACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT---ATGTATCCACTT 39801 || ||||| ||||| | ||| || | | || |||| || ||||| || Sbjct 262221 AACACAAGCAAAAGCAACGATTCTTTCAGCAAA---TGAATCAGATGAATCGATCCATTT 262277 Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | ||||||||||||||||| | |||||| || || || || |||| ||| | | Sbjct 262278 CATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGAAATAAACG 262337 Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921 || ||||| | ||| || | ||| || || || || |||||||||||||| ||||| Sbjct 262338 ATTCTTTTCGATAGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGAATG 262397 Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 |||||||||||||| ||||| || |||||||| | ||| |||| | ||| || || Sbjct 262398 AATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTTGAACTTC 262457 Query 39982 TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041 | |||||| | || | ||| || ||||| || || |||||||| || || Sbjct 262458 TTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCAAAGAAAGC 262517 Query 40042 CAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 | || ||| || || | ||| || || | || ||||||| | | ||| Sbjct 262518 AAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGAGGAAGATC 262577 Query 40102 TTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTT 40161 || ||| | ||| |||||||| |||||||| || || || || || ||||||||||| | Sbjct 262578 TTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTGTACATTTC 262637 Query 40162 CCATATATCACGATATTGTATTGGAAAAATA 40192 ||| || | | | ||||| || || || ||| Sbjct 262638 CCAAATTTTAGGGTATTGAATCGGGAACATA 262668 >seq1210 Length=122563 Score = 250 bits (276), Expect = 3e-61 Identities = 583/873 (67%), Gaps = 10/873 (1%) Strand=Plus/Minus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| || || || |||||||| ||||| ||||| |||||||| || | | || || Sbjct 43128 TTTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 43069 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 ||||| ||||||| ||||| ||||||| |||| | | || | || | | Sbjct 43068 ATCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACACAA 43009 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGA- 39503 ||||||||| |||||||| || || || |||||| |||| ||||||||| | | Sbjct 43008 CAATCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACTAA 42949 Query 39504 -GTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATT 39562 | || || || || || | ||| ||| | ||||| || || || || | Sbjct 42948 AGCGCAA--GGAAGCGCTTCGCAAACAAATTCTCTCTCGATCTCAACAGCATCGCGCACA 42891 Query 39563 ATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCG 39622 |||| | || ||| || || || | ||| | | | || || || || Sbjct 42890 ATCGTCTTCACACGCTCTTCGCTAAGTTTCTTTCTCAAAAGCGAATAAATCAAACAAGCA 42831 Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682 || |||||||| || || || || | ||| | ||||| ||||| || | |||||| Sbjct 42830 AAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGC 42771 Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCT 39742 |||| |||||| ||||| ||||| || || ||| ||| |||||| || || || ||| Sbjct 42770 ATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAGAAACTTCCAGAGAAAAATATACCT 42711 Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT---ATGTATCCAC 39799 || || ||||| ||||| | || || || | || | | |||| || ||||| Sbjct 42710 TCAACACAAGCAAAAGCAACGA-TC-CTTTCAGCAAAT-GAATCAGATGAATCGATCCAT 42654 Query 39800 TTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 ||| ||||||||||||||||| | | |||||| || ||||| || |||| ||| | | Sbjct 42653 TTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCAATTGCATGAAACAAA 42594 Query 39860 TAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAA 39919 || || ||| | ||| || | ||| || || || || |||||||||||||| ||| Sbjct 42593 CGATTCTTCTCAACTGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGAA 42534 Query 39920 TGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACC 39979 || || || || || || ||||| |||||||| ||| | || || | | ||| || Sbjct 42533 TGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGCGCCTCTGAGACTTGAACT 42474 Query 39980 TCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAAT 40039 ||| |||||| | || | ||| || || || || || ||||||||| || Sbjct 42473 TCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGAAGCGGCAAAGAAG 42414 Query 40040 GCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATA 40099 || | || ||| ||||| | ||| || || | || ||||||| || | | Sbjct 42413 GCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTTCCAGTGATGAAGA 42354 Query 40100 TCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATG 40159 |||| |||| ||| |||||||| || ||||| || || || || || ||||||||||| Sbjct 42353 TCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTTTTGTACATT 42294 Query 40160 TTCCATATATCACGATATTGTATTGGAAAAATA 40192 | ||| || | | | ||||| ||||| || ||| Sbjct 42293 TCCCAGATTTTAGGGTATTGAATTGGGAACATA 42261 >seq92 Length=773687 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| |||||||| | || | |||||||| ||| | || | || ||| |||| |||||| Sbjct 23837 TCCCCCCTGATCAACATAACGGGCAGTGTCATTGAACACACGCAACATTGGAACAATACC 23778 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | |||||||||||| ||| ||||| || || || || ||| || ||| Sbjct 23777 ATTAGAAGTCCCATTTGTTCCACGAATGTAACTGCCATAGGCACGTATGTTATGAACAGA 23718 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| |||||||| || |||| || | |||||| |||| || ||||| || Sbjct 23717 AACACCAATTCCTCCAGCAGATTTACTAATGACAGCACACTCCTTCAGAGTATCATAAAT 23658 Query 69930 ACCCTCTATGCTATCATCTATCAT 69953 ||||| || ||||| ||| |||| Sbjct 23657 CCCCTCAATACTATCCTCTTTCAT 23634 Score = 89.7 bits (98), Expect = 7e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 68733 TAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAG 68792 || |||||| ||| |||| |||||| ||||||||||| | | | |||||||| || || Sbjct 25927 TAGCACTCTGCGATTGTAGATATTAGAAGTATATGGTTCAAAACACTCATTATTGCCAAG 25868 Query 68793 AATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 68849 ||||||| || ||||||||||||||||| || || | | |||||||| ||| Sbjct 25867 AATTTGACTGGTAGATGCAGTTGGCATAGGGGCAACAAGAAGTGAATTTCTAACACC 25811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686673327663360