Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq183 93.3 9e-14 >seq183 Length=177699 Score = 93.3 bits (102), Expect = 9e-14 Identities = 187/267 (70%), Gaps = 14/267 (5%) Strand=Plus/Plus Query 332037 AATGCACTATCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACA 332096 |||||| |||||| || | || || | |||||| ||| |||||| |||||||| ||| Sbjct 58766 AATGCAGCATCTTTTTCAACATACTTTCTATATTCCTCAAGTGTTGTAGCACCAAT-ACA 58824 Query 332097 -CGAATCTCACCACGTGAAAGTGCTGGCTTAAGCATATT-GCT-CATGTCCATAGAACCA 332153 | || | ||||| | ||| || |||| | ||| || ||| |||| || || Sbjct 58825 TCTAAGTTGTCCACGAGCAAGCATAGGTTTAAAAAGATTAGCAGCAT--CCATTGATCCT 58882 Query 332154 TTACTTGCGGAACCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATT- 332212 | | || |||||| |||| | || |||||||||||||||||||| |||| || Sbjct 58883 TCAGTTCT---ACCAGCACCAAGAACAAGATGAATTTCATCAATGAAAAGAATAACTTTC 58939 Query 332213 --TTCACGTTTCTTTAG-TTCTTTTAGCAAATTGTCGATGCGTTCTTCAAATTCACCACG 332269 |||| | ||||| | |||||| || | | | | | |||||||||||||| | Sbjct 58940 CCTTCA-GCTTCTTCAACTTCTTTCAGAACAGCTTTCAACCTCTCTTCAAATTCACCCCT 58998 Query 332270 ATACTTAGTACCAGCAGTCAATGCACC 332296 |||||||| |||||| ||||||||| Sbjct 58999 ATACTTAGCACCAGCCACCAATGCACC 59025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113439033412352