Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq183 95.1 3e-14 >seq183 Length=177699 Score = 95.1 bits (104), Expect = 3e-14 Identities = 174/252 (69%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 48474 GCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAGAACTT 48533 |||||| | || || | |||||||| ||||| | || ||| | || | |||||| || Sbjct 59013 GCTGGTGCTAAGTATAGGGGTGAATTTGAAGAGAGGTTGAAAGCTGTTCTGAAAGAAGTT 58954 Query 48534 AAAAAACGAGAA---AATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCT 48590 || || ||| || || ||| | |||||||||||| | ||| || | | |||||| Sbjct 58953 GAAGAAGCTGAAGGGAAAGTTATTCTTTTCATTGATGAAATTCATCTTGTTCTTGGTGCT 58894 Query 48591 GGTGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCACGT 48650 ||| | | | | | ||||| |||||| ||| | | |||||| ||| | ||| Sbjct 58893 GGTAGAA-CTGAA--GGATCAATGGATGCTGCTAATCTTTTTAAACCTATGCTTGCTCGT 58837 Query 48651 GGTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTGAAAAA 48710 || | || | ||| ||||| ||||| |||||||||| | || | |||||||| Sbjct 58836 GGACAACTTAGATGTATTGGTGCTACAACACTTGAGGAATATAGAAAGTATGTTGAAAAA 58777 Query 48711 GATGCTGCATTT 48722 |||||||||||| Sbjct 58776 GATGCTGCATTT 58765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108605532356576