Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq520 279 4e-70 seq1210 277 1e-69 >seq520 Length=294854 Score = 279 bits (308), Expect = 4e-70 Identities = 594/873 (68%), Gaps = 17/873 (2%) Strand=Plus/Minus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| || |||||||| | | | || ||| |||||||||||||||| | || ||||| | Sbjct 262666 TGTTCCCGATTCAATACCCTAAAATTTGGGAAATGTACAAAAAAGCCGAAGCTTCATTCT 262607 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACC-A 43825 |||||||||||||||| ||| | | |||| | | || |||| || |||| | Sbjct 262606 GGACAGCAGAAGAAGTCGATCTCTCACAAGATCTTCCTCACTGGAA--CAACCTAACCGA 262549 Query 43826 CAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGT 43884 | ||| || || || || ||| | || || ||||| || |||||| ||||| Sbjct 262548 CGGCGAACGTCACTTCATCTCACACGTTCTTGCTTTCTTTGCCGCCTCCGACGGTATAGT 262489 Query 43885 CAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTT 43944 | || ||| | | | | || | ||||||||||| | | || ||||| || Sbjct 262488 CTTGGAGAATCTTGCCGGAAGATTCATGAAAGAAGTTCAAGTCTCTGAGGCACGTGCCTT 262429 Query 43945 TTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGA 44004 ||| || || || || || || ||||| |||||||| |||||||| ||||| |||| || Sbjct 262428 TTACGGTTTCCAGATCGCGATTGAAAACATTCATTCTGAAATGTATAGTCTCTTGATTGA 262369 Query 44005 TACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACC 44064 || || ||||| ||| ||| ||| |||| || ||| |||| || || || | || Sbjct 262368 GACTTATATCAATGATTCTATCGAAAAGAATCGTTTATTTCATGCAATTGACACGATTCC 262309 Query 44065 TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGG 44124 | ||| | ||||| || ||||| | |||||||| ||||| |||||| |||| Sbjct 262308 TTGTATTGCCAAGAAAGCTGATTGGGCTATGAAATGGATCGATTCATCTGATTCATTTGC 262249 Query 44125 AGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG-G 44183 ||| || | || || ||||| ||| ||||| || || || || || | |||| | Sbjct 262248 TGAAAGAATCGTTGCTTTTGCTTGTGTTGAAGGTATATTTTTCTCCGG-TAGTTTCTGTT 262190 Query 44184 CCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAA 44243 | || |||||| | || ||||| ||||| |||||||| || || |||||||| ||| | | Sbjct 262189 CAATTTTTTGGCTTAAAAAACGTGGTTTAATGCCTGGTTTAACTTTTTCAAACGAGCTTA 262130 Query 44244 TAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT-GTTACTTGGATATCTAGGA 44302 | ||||| ||||| | ||||| ||||||||||| || || || | | | || Sbjct 262129 TTTCACGTGACGAAGGTCTTCATTGTGATTTTGCTTGTTTACTTTATTCGCT---TTTGA 262073 Query 44303 GACGATAAGCCTTCATGTA-AGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGA 44361 || | | ||| || | || | | | ||||||| || || || | || || Sbjct 262072 GA--AAGAAACTTAGTGAAGAGCGTGTGAAAACTATTGTTCGTGATGCGGTTGAAATTGA 262015 Query 44362 ACAAGAATT--TATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTG 44419 |||||| | || || || || | ||| ||| | |||||||| | |||| Sbjct 262014 GAGAGAATTTGTTTGTGAAGCGC-TTCCTTGT-GCTTTGGTTGGAATGAACGGTGATTTG 261957 Query 44420 ATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAA 44479 |||| ||||||||||| | |||| ||| | ||| | ||||| ||||| | ||| Sbjct 261956 ATGAGTCAATATATTGAGTTTGTTGCTGATAGATTATTGGGTGAACTTGGTTGTGGAAAA 261897 Query 44480 CACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACA 44539 |||| ||| || || || ||||||| |||||| ||||| | | || ||||| Sbjct 261896 ATTTATAATGTTCAGAATCCTTTTGATTGGATGGAATTGATTTCACTTCAGGGGAAAACT 261837 Query 44540 AACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 ||||||||||| || |||||||| ||||||||| Sbjct 261836 AACTTTTTTGAGAAGCGCGTTGGGGAATATCAG 261804 >seq1210 Length=122563 Score = 277 bits (306), Expect = 1e-69 Identities = 596/874 (68%), Gaps = 19/874 (2%) Strand=Plus/Plus Query 43707 TGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTT 43766 |||| ||||||||||| | | | || ||| |||||||||||||||| | || || || | Sbjct 42263 TGTTCCCAATTCAATACCCTAAAATCTGGGAAATGTACAAAAAAGCCGAAGCTTCTTTCT 42322 Query 43767 GGACAGCAGAAGAAGTTGATTTGACTAAAGA-CTTAGCA-CATTGGATTGCATTAAAACC 43824 |||| || |||||||| ||||| | |||| ||| || || |||| || |||| Sbjct 42323 GGACCGCCGAAGAAGTCGATTTATCGGAAGATCTT--CATCACTGGAA--CAACCTAACC 42378 Query 43825 -ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATA 43882 || ||| || ||||| || ||| | || || ||||| || |||||| || Sbjct 42379 GACGGCGAACGCCACTTTATCTCACACGTTCTTGCCTTCTTTGCCGCTTCCGACGGCATC 42438 Query 43883 GTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGT 43942 ||| || ||| | | | | || | ||||||||||| | |||| || || | Sbjct 42439 GTCTTGGAGAATCTTGCAGGAAGATTCATGAAAGAAGTTCAAGTCTCAGAGGCGCGTGCT 42498 Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || || || || || || || ||||||||||| |||||||| ||||| |||| Sbjct 42499 TTCTACGGATTCCAGATCGCAATCGAGAATATTCATTCTGAAATGTATAGTCTCTTGATT 42558 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || || || ||||| ||| |||||| |||| |||||| |||| || ||||| | Sbjct 42559 GAGACTTATATCAATGATTCAGTTGAGAAGAATCGTTTGTTTCATGCAATTGAAACGATT 42618 Query 44063 CCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTT 44122 ||| |||| | | ||||| || ||||| | |||||||| ||||| |||||| ||| Sbjct 42619 CCTTGTATTACAAAGAAAGCTGATTGGGCTATGAAATGGATCGATTCATCTGATTCATTT 42678 Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 | ||| | | || || ||||| ||| ||||| || || || || ||| |||| | Sbjct 42679 GCTGAAAGGATCGTTGCTTTTGCTTGTGTTGAAGGTATATTTTTCTCTGGA-AGTTTCTG 42737 Query 44183 -GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 || || || ||| | || ||||| ||||| |||||||| || || |||||||| ||| | Sbjct 42738 TGCAATTTTCTGGCTTAAAAAACGTGGTTTAATGCCTGGTTTAACTTTTTCAAACGAGCT 42797 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG-TTACTTGGATATCTAG 44300 || ||||| ||||| | ||||| ||||||||||| ||| || || | | | Sbjct 42798 TATTTCACGTGACGAAGGACTTCATTGTGATTTTGCTTGTTTGATTTATTCGCT---TTT 42854 Query 44301 GAGACGATAAGCCTTCATGTAAGA-CAATTACAGA-TATTGTTGTAGAGGCAGTAAAGAT 44358 |||| | || | | | |||| | | ||| ||||| || || || |||| Sbjct 42855 GAGA-AAGAAAC--TTAGCGAAGAGCGTGTGAAGACGATTGTGCGCGATGCTGTTGAGAT 42911 Query 44359 AGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTT 44418 || ||||||| | ||| | ||| |||| | |||||||||| ||| Sbjct 42912 CGAGAGAGAATTTGTTTGCGAAGCGCTTCCTTGCGCTTTAGTTGGAATGAATGGTGATTT 42971 Query 44419 GATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAA 44478 ||||| || |||||||| | |||| ||| | || | | || || ||||| | || Sbjct 42972 GATGAGTCAGTATATTGAGTTTGTTGCTGATAGATTGTTGTGTGAGCTTGGTTGTGGGAA 43031 Query 44479 ACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAAC 44538 | |||| ||| || || || ||||||| ||||| |||||| | | || ||||| Sbjct 43032 AATTTATAATGTTCAGAATCCTTTTGATTGGATGGATTTGATTTCGCTTCAGGGGAAAAC 43091 Query 44539 AAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 ||||||||||| || |||||||| || |||||| Sbjct 43092 TAACTTTTTTGAGAAGCGCGTTGGCGAGTATCAG 43125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397323158281120