Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq23 125 6e-24 seq1436 116 3e-21 seq276 98.7 8e-16 seq78 98.7 8e-16 seq426 95.1 1e-14 seq1039 93.3 4e-14 seq37 89.7 4e-13 seq1642 87.8 2e-12 seq322 86.0 5e-12 seq147 84.2 2e-11 >seq23 Length=202804 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||| | || | || | ||| | ||| || |||||||| || ||||| ||| Sbjct 5488 TGCCTCCGCGGAGACGGAGAACGAGATGGAGCGTGGATTCTTTTTGGATGTTGTAATCGG 5429 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | || | |||||||| ||||| |||||| | |||||||| |||||||| || | Sbjct 5428 CAAGAGTACGGCCATCTTCGAGTTGTTTTCCGGCGAAGATGAGACGTTGTTGATCTGGTG 5369 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || || ||| ||| | | | || | ||||| | || ||| | Sbjct 5368 GAATTCCTTCCTTGTCTTGAATTTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCTA 5309 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| | |||||| || || |||||||| ||||||||||| Sbjct 5308 CCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACGAAGATTTGCAT 5260 >seq1436 Length=88924 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| || ||||| ||| | |||| ||||||| || ||||| ||| Sbjct 7296 GTGGATTCTTTTTGGATGTTGTAATCGGCAAGAGTGCGGCCGTCTTCAAGTTGTTTTCCG 7355 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || || || || | || || || || ||| ||| ||| Sbjct 7356 GCGAAGATGAGACGCTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGGATTTTGGCTTTG 7415 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || ||| || ||||| ||||| | |||||| || || ||| Sbjct 7416 ACGTTGTCGATGGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTGCCGGTTAGGGTT 7475 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 7476 TTCACAAAGATCTGCAT 7492 Score = 113 bits (124), Expect = 4e-20 Identities = 144/197 (73%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||| || ||||| ||| | | || |||||||||| ||||| ||| Sbjct 39023 GTGGATTCTTTTTGGATGTTGTAATCGGCAAGAGTTCGGCCGTCTTCGAGTTGTTTTCCG 39082 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | |||||||||||||| || || || | || || || || ||| ||| ||| Sbjct 39083 GCGAAGATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATTTTGGCTTTG 39142 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || ||| || ||||| ||||| | |||||| || || ||| Sbjct 39143 ACGTTGTCGATGGTGTCGGAGGATTCTACCTCTAGGGTTATGGTTTTGCCGGT-AGGGTT 39201 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 39202 TTCACGAAGATCTGCAT 39218 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| |||||||| | || ||||| | ||| || ||||| || ||||| || || | | Sbjct 38765 CCTCCACGCAACCGAAGCACTAAATGAAGCGTGGACTCTTTCTGGATATTATAATC-CGC 38823 Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | | | | ||||| | || || || || | || | ||||| ||||| || || Sbjct 38824 AAGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGG 38883 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || |||||||| ||||| |||| | | || | ||||| | || |||||| Sbjct 38884 GATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTGTCGATTGTGTCGGAGGATTCAAC 38943 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || | ||| || || || ||||| |||||||||||||| Sbjct 38944 TTCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACAAAGATTTGCAT 38991 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||||| | |||||||| | |||||| ||||| || ||||| || || | | Sbjct 7038 CCACCACGCAACCTAAGAACCAAATGAAGCGTAGACTCTTTCTGGATATTATAATC-CGC 7096 Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | | | | ||||| | || || || || | || | ||||| ||||| || || Sbjct 7097 AAGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGG 7156 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || |||||||| ||||| |||| | | || | ||||| | || |||||| Sbjct 7157 AATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTGTCGATTGTGTCAGAGGATTCAAC 7216 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || | ||| || || || ||||| || ||||||||||| Sbjct 7217 TTCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACGAAGATTTGCAT 7264 >seq276 Length=436033 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| | |||| ||||||| |||||||| ||| Sbjct 192451 GTTGATTCCTTCTGGATATTGTAGTCGGCAAGAGTGCGGCCGTCTTCAAGCTGTTTTCCG 192392 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| || ||||||||||| || | || || || || ||| ||| || Sbjct 192391 GCGAAGATGAGTCGTTGTTGATCCGGTGGAATTCCTTCCTTGTCTTGGATTTTGGCCTTG 192332 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | | |||||| || || ||||| | || ||||| || ||| Sbjct 192331 ACGTTGTCGATGGTATCAGAAGATTCAACCTCGAGGGTTATCGTCTTACCCGTGAGGGTT 192272 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 192271 TTGACGAAGATCTGCAT 192255 >seq78 Length=963227 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| | |||| ||||||| |||||||| ||| Sbjct 597701 GTTGATTCCTTCTGGATATTGTAGTCGGCAAGAGTGCGGCCGTCTTCAAGCTGTTTTCCG 597760 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| || ||||||||||| || | || || || || ||| ||| || Sbjct 597761 GCGAAGATGAGTCGTTGTTGATCCGGTGGAATTCCTTCCTTGTCTTGGATTTTGGCCTTG 597820 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | | |||||| || || ||||| | || ||||| || ||| Sbjct 597821 ACGTTGTCGATGGTATCAGAAGATTCAACCTCGAGGGTTATCGTCTTACCCGTTAGGGTT 597880 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 597881 TTGACGAAGATCTGCAT 597897 >seq426 Length=522792 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || |||||||||||| | |||| ||||||| |||||||| || Sbjct 162622 GTTGATTCCTTCTGGATATTGTAGTCGGCAAGAGTGCGGCCGTCTTCAAGCTGTTTTCCT 162681 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| || ||||||||||| || | || || || || ||| ||| || Sbjct 162682 GCGAAGATGAGTCGTTGTTGATCCGGTGGAATTCCTTCCTTGTCTTGGATTTTGGCCTTG 162741 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || || | | |||||| || || ||||| | || ||||| || ||| Sbjct 162742 ACGTTGTCGATGGTATCAGAAGATTCAACCTCGAGGGTTATCGTCTTACCCGTTAGGGTT 162801 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 162802 TTGACGAAGATCTGCAT 162818 >seq1039 Length=240209 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 |||||||| | ||| || || ||||| |||||||| || | | | ||| |||| || Sbjct 129322 ACCAAATGGAGCGTGGACTCCTTTTGGATATTGTAATCAGCAAGGGTACGCCCGTCCTCC 129381 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || |||| |||||||| || || || || | || || ||||| Sbjct 129382 AGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGGATCCCTTCCTTATCTTGA 129441 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | |||| || |||| |||||||| ||||| || | ||| Sbjct 129442 ATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTCTTG 129501 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || || ||||||||||| Sbjct 129502 CCGGTGAGGGTCTTAACGAAGATTTGCAT 129530 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| || | |||| ||| | || || || || || || ||||| || | Sbjct 128848 CCTCCCCTCAAACGAAGGACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 128907 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | ||||||||||| || || || |||| | | || |||||||| || Sbjct 128908 AAGGTACGGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCCGGGGGA 128967 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| ||||| |||| | || | ||||||| | ||||| Sbjct 128968 ATTCCCTCCTTATCCTGTATCTTAGCCTTCACATTGTCAATCGTGTCTGAGCTCTCAACC 129027 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | |||||| | || || || ||||||||||| || || |||||| Sbjct 129028 TCCAAAGTTATTGTCTTACCGGTAAGAGTTTTCACGAAAATCTGCATA 129075 >seq37 Length=1182629 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 27091 CGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTT 27150 ||||||| | ||| || |||||| | |||||||| || |||||||| || | || || | Sbjct 292973 CGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGATCCGGAGGAATTCCTTCCT 293032 Query 27151 TATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTA 27210 | || ||||||| ||| | | | || | ||||| | | ||| || || || || | Sbjct 293033 TGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTTTCCACCTCAAGGGTGA 293092 Query 27211 TAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | | || || || ||||||||||| ||||||||||| Sbjct 293093 TGGTCTTTCCGGTGAGAGTTTTCACGAAGATTTGCAT 293129 >seq1642 Length=65368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 |||||||| | ||||| ||||| ||||| ||||| || ||| | || || | || || Sbjct 54142 ACCAAATGGAGGGTAGACTCTTTCTGAATGTTGTAATCAGCTAAAGTC-CGACCATCCTC 54084 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||||| || || | ||||| | |||||| || || || | || ||||| || Sbjct 54083 AAGCTGTTTTCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGAATGCCTTCTTTGTCCTG 54024 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| || | | |||| || |||| |||||||| ||||| || | || Sbjct 54023 AATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTCTT 53964 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || || || || ||||||||||| Sbjct 53963 GCCAGTGAGGGTCTTAACGAAGATTTGCAT 53934 >seq322 Length=397916 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 ||||||||| | ||||| || || || || ||||| || ||| ||| | | || | Sbjct 312092 TACCAAATGAAGGGTAGATTCCTTCTGTATGTTGTAATCAGCTAGGGTTCTTC-CATCCT 312150 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | |||||||| || || | || || | ||| ||||| || || | ||||||||||| Sbjct 312151 CAAGCTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAGGGATTCCCTCTTTATCCT 312210 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 ||||| ||||| | || | ||| |||| ||||| || | ||| |||| || Sbjct 312211 GAATCTTAGCTTTCACATTATCGATAGTATCTGAACTCTCAACCTCCAAAGTAATAGTTT 312270 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || |||| ||| || ||||| |||||||| Sbjct 312271 TTCCTGTCAAAGTCTTAACAAAAATTTGCAT 312301 >seq147 Length=403342 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCT--CGTCTTCGAGCTGTTTAC 27108 || || || || || |||||||||||| || | || || ||||||| |||||||| | Sbjct 352324 GTTGATTCCTTCTGGATATTGTAGTCGG-CAAGA-GCCCTGTCGTCTTCAAGCTGTTTTC 352381 Query 27109 CGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTT 27168 | ||| | ||||| | ||||||||||| || | || || || | ||| |||| | Sbjct 352382 CCGCGAAGATGAGTTGTTGTTGATCCGGTGGAATTCCTTCCTTGTATTGGATTTTGTCCT 352441 Query 27169 TCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAG 27228 | | | | || | || || | | | |||| || || ||||| | || ||||| || | Sbjct 352442 TGACGTTGTCGATGGTATCAGAAGATCCAACCTCGAGGGTTATCGTCTTACCCGTTAGGG 352501 Query 27229 TTTTCACAAAGATTTGCAT 27247 |||| || ||||||||||| Sbjct 352502 TTTTGACGAAGATTTGCAT 352520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424792374175488