Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq31 118 1e-21 seq662 113 6e-20 seq309 93.3 5e-14 seq1159 82.4 1e-10 >seq31 Length=1468034 Score = 118 bits (130), Expect = 1e-21 Identities = 226/333 (68%), Gaps = 0/333 (0%) Strand=Plus/Minus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| || || | |||||| || |||||||| | || ||||| | | ||| Sbjct 1355830 ATCAAGAATTTCAGGTCTATTAGTAGCAGCAATAACAATAACACCAGTATTACCACTAAA 1355771 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| || || | || ||||| | |||||||||||| ||||||||| || Sbjct 1355770 ACCATCCATTTCAGTCAACAACTGATTCAATGTTTGTTCTCTTTCATCATTTCCTCCACC 1355711 Query 11602 ACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGG 11661 | ||| | || | || | || || ||||||||||||||||| || | | ||| || Sbjct 1355710 AATACCTGTACCTCTCTGTCTTCCAACAGCATCAATCTCATCAATAAATATCAAACACGG 1355651 Query 11662 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAA 11721 | |||||| || | | ||| | ||| | || ||| ||||| ||||||||||| Sbjct 1355650 TGAATTTTCTTTCGCCTTATTAAACAAATCTCTTACTCTTGAAGCACCAACACCAACAAA 1355591 Query 11722 CATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGAT 11781 |||||| | || | || | || | | |||||| || |||| ||| || || || Sbjct 1355590 CATCTCAATGAATTCTGAACCTGATAATGAAAAGAATGGAACTTTTGCTTCTCCTGCAAT 1355531 Query 11782 GGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||| || || || |||||||| || || || Sbjct 1355530 TGCTTTTGCTAGTAGTGTCTTTCCTGTCCCAGG 1355498 >seq662 Length=244491 Score = 113 bits (124), Expect = 6e-20 Identities = 271/406 (67%), Gaps = 8/406 (2%) Strand=Plus/Minus Query 11537 TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT 11596 ||||| |||||||| || || | | ||| || | || |||||||| ||||| || || Sbjct 188778 TCAAATCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCGTTCCCT 188719 Query 11597 GGCATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 |||| |||| | |||||| | ||||| |||||||| ||||||| || ||| Sbjct 188718 CC---ACCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACA 188662 Query 11654 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 ||||| || ||| || ||| | | || | ||| ||||| | ||||| ||| Sbjct 188661 ATACAAGGAGCATTCTCTTTGGCTTTCTTGAATAAATCACGAACTCGAGAAGCACCAACA 188602 Query 11714 CCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTC 11772 || ||||||||||| ||||| | | ||||| | || || || |||||| || ||| Sbjct 188601 CCGACAAACATCTCAACAAACTCAGAACCAGAG-ATTGAGAAAAACGGGACACCTGCTTC 188543 Query 11773 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGC 11832 |||||| || || ||| | || ||||| || || ||||| ||| ||||||| | Sbjct 188542 ACCCGCAATAGCCTTGGCTAATAGCGTCTTACCAGTCCCTGGGGGACCAACGAGAAGAAC 188483 Query 11833 GCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCAC 11892 ||| || || || || | || | |||||||| | || ||||| || || Sbjct 188482 TCCTTTTGGTATGCGAGCCCCGATAGCAGTGAACCTCTCGGGCTTTTTCAGAAACTCGAC 188423 Query 11893 AATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCA 11938 | ||| || || | |||||| | || | ||| |||||||| Sbjct 188422 TACCTCCATAAAATCCTGTTTGGCTTCATCTACCCCAGCAACATCA 188377 >seq309 Length=414593 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/203 (70%), Gaps = 16/203 (8%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | ||||||||||| ||||| ||||||||||| | Sbjct 386824 AAATCCATCCATCTCAGTCAAAAGCTGATTAATTGTCTGTTCCCTCTCATCATTCCC--- 386880 Query 11599 CATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 |||| ||||||| | || | || || |||||||| |||||||| || ||||| Sbjct 386881 ACCACCAAGTCCAGCACCCCTCTGTCTCCCAACAGCATCAATTTCATCAATAAACACAAT 386940 Query 11656 ACATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCC 11710 || || | || ||| || | ||||| | ||| | |||||| ||||| Sbjct 386941 GCAAGGCGCCTTCGACTTT-----GCCTTCTCAAACAAATCCCTAACCCTAGAAGCACCA 386995 Query 11711 ACACCAACAAACATCTCCACAAA 11733 ||||||||||||| |||||||| Sbjct 386996 ACACCAACAAACAATTCCACAAA 387018 >seq1159 Length=130826 Score = 82.4 bits (90), Expect = 1e-10 Identities = 117/163 (72%), Gaps = 10/163 (6%) Strand=Plus/Minus Query 189464 TTGGAATA--GGTGCAAATGATGTTGCCAACGCTTTCGCAACATCAGTTGGATCAGGGGC 189521 |||||| | ||||| ||||||||||| || || | | ||| ||||||||||| || || Sbjct 85057 TTGGAACATTGGTGCTAATGATGTTGCAAATGCAATGGGAACTTCAGTTGGATCTGGTGC 84998 Query 189522 TTTGAAAGTTAAACAAGCCGTACCACTT----GCGGCTGTGTGTGAATTCTCGGGGTCTC 189577 |||| | ||| ||||| || ||| || || |||| ||||| || ||| | Sbjct 84997 ATTGACACTTAGGCAAGCTGT----CTTGACAGCTGCAGTGTTAGAATTTTCAGGGGCAT 84942 Query 189578 TGTTTATGGGAAGTCATGTCGTAAAAACAATACGAAAAGGAAT 189620 |||| ||||||| ||||||| || ||||| | ||||| || Sbjct 84941 TGTTGATGGGAACTCATGTCACAAGCACAATGCAGAAAGGGAT 84899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627816710630400