Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq662 105 8e-18 >seq662 Length=244491 Score = 105 bits (116), Expect = 8e-18 Identities = 228/337 (68%), Gaps = 8/337 (2%) Strand=Plus/Minus Query 14095 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAA 14154 |||||| || ||| | ||| || || || ||||||| || || || | ||||| Sbjct 188833 GTCAAGAATGTCAGCCCTGTTGGTTGCTGCAATGACAATGACCCCGGTATTACCCTCAAA 188774 Query 14155 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCAT 14214 |||||||| || ||||| ||||| |||| ||| ||||| | |||||| ||| | Sbjct 188773 TCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCGTTCCCTCC--- 188717 Query 14215 ACCACCCGCACTGC---GTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 14271 |||| || ||| ||||| | || || || ||||||||||| | ||||| ||||| Sbjct 188716 ACCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACAATACA 188657 Query 14272 TGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331 || ||| || ||| | || | ||| || |||| ||||| ||||| || Sbjct 188656 AGGAGCATTCTCTTTGGCTTTCTTGAATAAATCACGAACTCGAGAAGCACCAACACCGAC 188597 Query 14332 AAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCG 14390 ||||||||| ||||| | | | | | |||| || || ||||| | |||||||| Sbjct 188596 AAACATCTCAACAAACTCAGAACCAG-AGATTGAGAAAAACGGGACACCTGCTTCACCCG 188538 Query 14391 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 | || || ||| | || ||||| || |||||||| Sbjct 188537 CAATAGCCTTGGCTAATAGCGTCTTACCAGTCCCTGG 188501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618223200413440