Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1210 178 2e-39 seq520 154 2e-32 seq662 123 3e-23 seq428 95.1 1e-14 seq31 95.1 1e-14 seq22 95.1 1e-14 seq309 91.5 2e-13 >seq1210 Length=122563 Score = 178 bits (196), Expect = 2e-39 Identities = 383/565 (68%), Gaps = 11/565 (2%) Strand=Plus/Plus Query 94684 TATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGT 94743 ||||| || ||| | ||||||||| | | ||| | || || |||| |||| ||| Sbjct 42565 TATATCAATGATTCAGTTGAGAAGAATCGTTTGTTTCATGCAATTGAAACGATTCCTTGT 42624 Query 94744 ATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCT 94803 ||| ||||||||| |||||||||||||| ||| | ||| || || ||| |||||| Sbjct 42625 ATTACAAAGAAAGCTGATTGGGCTATGAAATGGATCGATTCA---TCTGATTCATTTGCT 42681 Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 || | || | || ||||| |||||||| ||||| || |||||||| ||||| || Sbjct 42682 GAAAGGATCGTTGCTTTTGCTTGTGTTGAAGGTATATTTTTCTCTGGAAGTTTCTGTGCA 42741 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 |||| ||||| || || || ||| | ||||| ||| | || || ||||||||||| Sbjct 42742 ATTTTCTGGCTTAAAAAACGTGGTTTAATGCCTGGTTTAACTTTTTCAAACGAGCTTATT 42801 Query 94924 TCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGGAACTTTTCAAATTATTGCGTA 94981 || |||||||| ||||| || || ||||| | | || | ||| | ||| | | Sbjct 42802 TCACGTGACGAAGGACTTCATTGTGATTTTGCTTGTTTGATTTATTC--GCTTTTGAGAA 42859 Query 94982 TTAAAC-CAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAA 95040 |||| | ||| ||| | | | | ||||| || || |||||||| |||| | Sbjct 42860 AGAAACTTAGCGA-AGAGCGTGTGAAGACGATTGTGCGCGATGCTGTTGAGATCGAGAGA 42918 Query 95041 GGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTCT 95100 | ||| | | || || ||||| |||||| | | || |||||| ||| ||| | Sbjct 42919 GAATTTGTTTGCGAAGCGCTTCCTTGCGCTTTAGTTGGAATGAATGGTGATTTGATGAGT 42978 Query 95101 GAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGG-GGTGCCTCCAATTTG 95159 | |||||||||| ||| |||||||||||||| || | || ||| ||||| Sbjct 42979 CAGTATATTGAGTTTGTTGCTGATAGATTGTTGTGTGAGCTTGGTTGTG-GGAAAATTTA 43037 Query 95160 GAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTT 95219 || ||||||| ||||| | ||||| ||| || | ||||| || ||||| Sbjct 43038 TAATGTTCAGAATCCTTTTGATTGGATGGATTTGATTTCGCTTCAGGGGAAAACTAACTT 43097 Query 95220 CTTCGAAAAGAGGGTTGGGGACTAT 95244 || || ||| | ||||| || ||| Sbjct 43098 TTTTGAGAAGCGCGTTGGCGAGTAT 43122 >seq520 Length=294854 Score = 154 bits (170), Expect = 2e-32 Identities = 342/510 (67%), Gaps = 5/510 (1%) Strand=Plus/Minus Query 94736 TTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT 94795 |||| |||||| |||||||| |||||||||||||| ||| | ||| || || || Sbjct 262312 TTCCTTGTATTGCCAAGAAAGCTGATTGGGCTATGAAATGGATCGATTCA---TCTGATT 262256 Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 | |||||||| || || | || ||||| |||||||| ||||| || ||||| ||| | Sbjct 262255 CATTTGCTGAAAGAATCGTTGCTTTTGCTTGTGTTGAAGGTATATTTTTCTCCGGTAGTT 262196 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 |||| | |||| |||||| || || || ||| | ||||| ||| | || || |||| Sbjct 262195 TCTGTTCAATTTTTTGGCTTAAAAAACGTGGTTTAATGCCTGGTTTAACTTTTTCAAACG 262136 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTAT 94975 ||||||| || |||||||| || || || || ||||| ||||| | | Sbjct 262135 AGCTTATTTCACGTGACGAAGGTCTTCATTGTGATTTTGCTTGTTTACTTTATTCGCTTT 262076 Query 94976 TGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTG 95035 || | | |||| | ||| | | | |||||||| || || ||||| |||| Sbjct 262075 TGAGAAAGAAACTTAGTGAAGAGCGTGTGAAAACTATTGTTCGTGATGCGGTTGAAATTG 262016 Query 95036 AGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAA 95095 ||| || ||| | | || || ||||| || ||| | | || ||||| ||| | Sbjct 262015 AGAGAGAATTTGTTTGTGAAGCGCTTCCTTGTGCTTTGGTTGGAATGAACGGTGATTTGA 261956 Query 95096 TGTCTGAATATATTGAGTATGTATCTGATAGATTGTT-GAAGCAGATCGGGGTGCCTCCA 95154 || | |||||||||||| ||| |||||||||| || | | | | | ||| | Sbjct 261955 TGAGTCAATATATTGAGTTTGTTGCTGATAGATTATTGGGTGAACTTGGTTGTG-GAAAA 261897 Query 95155 ATTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACA 95214 |||| || ||||||| ||||| | ||||| ||| || | ||||| || Sbjct 261896 ATTTATAATGTTCAGAATCCTTTTGATTGGATGGAATTGATTTCACTTCAGGGGAAAACT 261837 Query 95215 AACTTCTTCGAAAAGAGGGTTGGGGACTAT 95244 ||||| || || ||| | |||||||| ||| Sbjct 261836 AACTTTTTTGAGAAGCGCGTTGGGGAATAT 261807 >seq662 Length=244491 Score = 123 bits (136), Expect = 3e-23 Identities = 305/459 (66%), Gaps = 8/459 (2%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || ||| | | || || || || ||||||| | || || | | ||||| Sbjct 188832 TCAAGAATGTCAGCCCTGTTGGTTGCTGCAATGACAATGACCCCGGTATTACCCTCAAAT 188773 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||||||||||||| | || ||||| | |||||| ||| || | Sbjct 188772 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCTCTTTCATCGTTCCCT---CCA 188716 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| |||| | |||||| ||||||| |||||||| ||||||| || || || || Sbjct 188715 CCAATTCCAGTGCCTCGTTGCCTTCCCACAGCATCAATTTCATCAACAAAAACAATACAA 188656 Query 9734 GGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACA 9793 || ||| || || | || | ||| || || || || || ||||| ||| Sbjct 188655 GGAGCATTCTCTTTGGCTTTCTTGAATAAATCACGAACTCGAGAAGCACCAACACCGACA 188596 Query 9794 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9852 |||||||| ||||| | | | | | |||| || || |||||| | ||||||||| Sbjct 188595 AACATCTCAACAAACTCAGAACCAG-AGATTGAGAAAAACGGGACACCTGCTTCACCCGC 188537 Query 9853 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCG 9912 ||| || ||| | || |||||||| || ||||| ||| |||| || | ||| Sbjct 188536 AATAGCCTTGGCTAATAGCGTCTTACCAGTCCCTGGGGGACCAACGAGAAGAACTCCTTT 188477 Query 9913 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATTTC 9972 ||| || || || | || | | ||||| || | || ||||| || || | || Sbjct 188476 TGGTATGCGAGCCCCGATAGCAGTGAACCTCTCGGGCTTTTTCAGAAACTCGACTACCTC 188417 Query 9973 TTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 || || | |||||| | || | ||| ||||||| Sbjct 188416 CATAAAATCCTGTTTGGCTTCATCTACCCCAGCAACATC 188378 >seq428 Length=334874 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/226 (70%), Gaps = 13/226 (6%) Strand=Plus/Plus Query 9590 ACAACAAT---ACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATA 9646 |||||||| ||| || | | ||||| |||||||| ||||||||||||||||| | Sbjct 182753 ACAACAATGACACCGGTATTACCCTCAAATCCATCCATTTCTGTCAAAAGTTGGTTGAGG 182812 Query 9647 GTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCACG 9703 || ||||| | ||| |||||| || |||| || | | | ||| |||| || Sbjct 182813 GTCTGTTCTCTTTCGTCATTCCCT---CCACCAATTCCCGTCCCTCTTTGTCTTCCAACA 182869 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGA 9761 |||||||| ||||||| ||||| || || || ||| || ||| |||| || | Sbjct 182870 GCATCAATTTCATCAACAAAGACAATACAAGGAGCATTCTCTTTAGC--CTTCTTGAACA 182927 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 ||| || ||||| || || | ||||||||||||||| ||||| Sbjct 182928 AATCACGGACACGAGAAGCACCAATACCAACAAACATCTCAACAAA 182973 >seq31 Length=1468034 Score = 95.1 bits (104), Expect = 1e-14 Identities = 223/335 (67%), Gaps = 4/335 (1%) Strand=Plus/Minus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 |||||| || ||| | ||| || || || || |||| || ||| || | | | ||| Sbjct 1355830 ATCAAGAATTTCAGGTCTATTAGTAGCAGCAATAACAATAACACCAGTATTACCACTAAA 1355771 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| || ||||| | || || | |||||||| | ||||||||| || Sbjct 1355770 ACCATCCATTTCAGTCAACAACTGATTCAATGTTTGTTCTCTTTCATCATTTCCTCCACC 1355711 Query 9676 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 9735 | ||| | || | || |||| || ||||||||||||||||| || | | || || Sbjct 1355710 AATACCTGTACCTCTCTGTCTTCCAACAGCATCAATCTCATCAATAAATATCAAACACGG 1355651 Query 9736 TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACA 9793 | |||||| || | ||| | ||| | | || |||| || || ||||||||| Sbjct 1355650 TGAATTTTCTTTCGCCTTATTAAACAAATCTCTT--ACTCTTGAAGCACCAACACCAACA 1355593 Query 9794 AACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCA 9853 |||||||| | || | || | || || | ||| || || || | ||| || ||| Sbjct 1355592 AACATCTCAATGAATTCTGAACCTGATAATGAAAAGAATGGAACTTTTGCTTCTCCTGCA 1355533 Query 9854 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || ||| || || || ||||| || || || || Sbjct 1355532 ATTGCTTTTGCTAGTAGTGTCTTTCCTGTCCCAGG 1355498 >seq22 Length=166781 Score = 95.1 bits (104), Expect = 1e-14 Identities = 188/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 7361 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 7420 |||||||| || | || ||| | || || || |||||| |||||||| ||||||||| Sbjct 81608 AATTACCGTGAAGCGTATGGAATTTTCGCTTGTAACGGAATTCTCTTCAATCATGAATCA 81549 Query 7421 CCGAGACGAGGTGCAGACTTT-GTCACAAAGAAGATTACCGAGGGTATCAAACAAATCAT 7479 || | |||||| ||| ||| || || | || ||||| | | | | ||||| Sbjct 81548 CCTCGCAGAGGTG-AGAATTTCGTAACGAGAAAAATTACTCGTGCTGTTGGAAGAATCAA 81490 Query 7480 GAAGGGTGAAAAGGAGTT--CATTGAATTGGGTAACATAAACGCGGCGAGAGATTGGGGT 7537 || || | || ||| | || |||| | | | || || | ||||||||||| Sbjct 81489 GATTGGATTACAG-AGTAAGCTTTTCCTTGGAAACCTTCAA-GCTTCAAGAGATTGGGGA 81432 Query 7538 CACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGACGAA 7597 || || ||||||||||| |||||| | ||||||||||||||| |||| || || Sbjct 81431 TTTGCTGGTGATTATGTTGAAGCGATGTGGTTAATGCTTCAACAAGAGAAAGCTGATGAT 81372 Query 7598 TATGTAGTAGCAACGGGTGAGACCCATACAGT 7629 ||||| ||||| |||| || | |||||||| Sbjct 81371 TATGTTGTAGCGACGGAAGATTCACATACAGT 81340 >seq309 Length=414593 Score = 91.5 bits (100), Expect = 2e-13 Identities = 251/380 (66%), Gaps = 20/380 (5%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||| |||||||| || ||||| || ||||||| ||||||||| | Sbjct 386824 AAATCCATCCATCTCAGTCAAAAGCTGATTAATTGTCTGTTCCCTCTCATCATTCCC--- 386880 Query 9673 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 9729 |||| ||||||| | || | || || |||||||| |||||||| || || || Sbjct 386881 ACCACCAAGTCCAGCACCCCTCTGTCTCCCAACAGCATCAATTTCATCAATAAACACAAT 386940 Query 9730 GCATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGC 9782 ||| || | || ||| || ||||| | ||||| || || || | || | Sbjct 386941 GCAAGGCGCCTTCGACTTT-----GCCTTCTCAAACAAATCCC-TA-ACCCTAGAAGCAC 386993 Query 9783 CCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAG 9842 | ||||||||||||| |||||||| | | || | ||| | ||| || ||| || Sbjct 386994 CAACACCAACAAACAATTCCACAAACTCCGAAGCCGCACACGAAAAGAACGGTACACCAG 387053 Query 9843 ATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGA 9902 ||| || |||| || | || | || ||||| || || || || || | | | Sbjct 387054 CTTCCCCGGCAACCGCCCTCGCTAATAGTGTCTTTCCGGTTCCCGGTGGCCCAACCAAAA 387113 Query 9903 GGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAAT 9962 | ||| |||||||| || || || ||| | ||||| | ||| | |||| Sbjct 387114 GACACCCTTTAGGAATCTTAGCACCTAAAGCAGTGTACTTATCAGGATTCTTCAAGAAAT 387173 Query 9963 CCACAATTTCTTCCAATTCA 9982 | |||| ||||| |||||| Sbjct 387174 CAACAACTTCTTGTAATTCA 387193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583060858197760