Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq269 87.8 8e-13 >seq269 Length=519709 Score = 87.8 bits (96), Expect = 8e-13 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 65099 TGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATTCTGAGCCATTCCG 65158 || ||| | ||||| || | | |||| || || |||| ||||||||| ||||||| Sbjct 4532 TGGCCAATGGGCATCAAAAGACTAATGTTATTCCCTCCAACAAAATTCTGCGCCATTCTA 4473 Query 65159 ATAATTGCT---GCATTTAAACTCGCTTCACCGTGATGATATCCTGAATGTTCAGAGACA 65215 |||| | | ||| | || || |||| ||||||||||| | | | |||||| ||| Sbjct 4472 ATAAGAGTTTGGGCA---AGACCCGTTTCATCGTGATGATATGCACATTCTTCAGAAACA 4416 Query 65216 TATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAATTCTTTTTAAA 65265 || ||| |||||||| ||||| ||||| | | ||||||||| || || Sbjct 4415 TAGCCAATAAATTGATTTACTTTAATTTCATTCGCTAAATTCTTCTTGAA 4366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235601228673600