Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1210 127 2e-24 >seq1210 Length=122563 Score = 127 bits (140), Expect = 2e-24 Identities = 244/351 (70%), Gaps = 8/351 (2%) Strand=Plus/Plus Query 59784 GAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAA-CGAGTCTATCCACTCCGAGACGT 59841 ||||| || | ||||||| | ||| ||| ||| |||| ||| || || || | || Sbjct 42487 GAGGCGCGTGCTTTCTACGGATTCCAGATCG--CAATCGAGAATATTCATTCTGAAATGT 42544 Query 59842 ACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTG 59901 | ||| |||| || | | |||| ||| | | |||||| | || |||| | || Sbjct 42545 ATAGTCTCTTGATTGAGACTTATATCAATGATTCAGTTGAGAAGAATCGTTTGTTTCATG 42604 Query 59902 CCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAG 59959 | || || ||| | || | | ||| | | ||||| || ||||| ||| | ||||| || Sbjct 42605 CAATTGAAACGATTCCTTGTA-TTACAAAGAAAGCTGATTGGGCTATGAAATGGATCGAT 42663 Query 59960 TCCTGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTT 60019 || | | |||||||| || | || | |||||||| || || ||||| || || || Sbjct 42664 TCATCT-GATTCATTTGCTGAAAGGATCGTTGCTTTTGCTTGTGTTGAAGGTATATTTTT 42722 Query 60020 CTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAG 60079 |||||| |||||||| ||||||||||| ||||| ||||| | ||||| || | | Sbjct 42723 CTCTGGAAGTTTCTGTGCAATTTTCTGGCTTAAAAAACGTGGTTTAATGCCTGGTTTAAC 42782 Query 60080 TTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGC 60130 ||| || |||||||| ||||| || ||||| || || ||| || ||||| Sbjct 42783 TTTTTCAAACGAGCTTATTTCACGTGACGAAGGACTTCATTGTGATTTTGC 42833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548336765698560