Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1210 125 8e-24 seq732 87.8 2e-12 seq121 87.8 2e-12 seq1166 86.0 7e-12 seq802 86.0 7e-12 seq771 86.0 7e-12 seq259 86.0 7e-12 seq235 86.0 7e-12 seq108 86.0 7e-12 seq810 84.2 2e-11 seq160 82.4 8e-11 >seq1210 Length=122563 Score = 125 bits (138), Expect = 8e-24 Identities = 356/537 (66%), Gaps = 14/537 (3%) Strand=Plus/Minus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || || ||||| | | |||||||| | ||||| || || | ||| || || |||||| Sbjct 42794 TCGTTTGAAAAAGTTAAACCAGGCATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAG 42735 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 || ||| ||| || || ||||| ||||| ||||| || || | | || || || Sbjct 42734 AAACTTCCAGAGAAAAATATACCTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAA- 42676 Query 74910 GGTGCATCGGAAG--TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGG 74966 || ||| || | || ||||| || |||||| |||||||| | | | ||| Sbjct 42675 --TGAATCAGATGAATCGATCCATTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGA 42618 Query 74967 ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCA 75026 | || || || || || || | | |||||| | | ||| |||| | ||| Sbjct 42617 ATCGTTTCAATTGCATGAAACAAACGATTCTTCTCAACTGAATCATTGATATAAGTCTCA 42558 Query 75027 ATCATAAGTGAGTACGTCTCCGAATGAATCGACTCG-TTGAACGA-CTGGTACGCGTAGA 75084 |||| || ||| | || |||||||| |||| ||| ||| |||| | |||||| Sbjct 42557 ATCAAGAGACTATACATTTCAGAATGAATATTCTCGATTG--CGATCTGGAATCCGTAGA 42500 Query 75085 AAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCAT 75142 ||| |||||||||| | || || || || |||| ||| || | | |||||||| Sbjct 42499 AAGCACGCGCCTCTGAGACTTGAACTTCTTTCATGAATC-TTCCTG-CAAGATTCTCCAA 42442 Query 75143 GACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATC 75202 |||||||||||| || ||||| || || || || || | |||||||||||| || | Sbjct 42441 GACGATGCCGTCGGAAGCGGCAAAGAAGGCAAGAACGTGTGAGATAAAGTGGCGTTCGCC 42382 Query 75203 GTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCA 75262 ||| || || |||| ||| | | || || ||| ||||| | || ||| | ||||| Sbjct 42381 GTCGGTTAGGTTGTTCCAGTGATGAAGATCTTCCGATAAATCGACTTCTTCGGCGGTCCA 42322 Query 75263 GAAACTCCCAATCGCCTTTTTGTACAAAGACCACAAGTCAGGGTAATTGATTGGAAA 75319 |||| | || |||||||||| ||| | | |||||| | ||||| || Sbjct 42321 GAAAGAAGCTTCGGCTTTTTTGTACATTTCCCAGATTTTAGGGTATTGAATTGGGAA 42265 >seq732 Length=222180 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 80928 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 80987 Query 79684 TGAGCTACGAAAGCA 79698 ||||||| ||||||| Sbjct 80988 TGAGCTATGAAAGCA 81002 >seq121 Length=700349 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 70730 CTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 70671 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 70670 CTGAGCTATGAAAGC 70656 >seq1166 Length=256954 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 112219 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 112160 Query 79684 TGAGCTACGAAAGCAAA 79700 ||||||| |||||| || Sbjct 112159 TGAGCTATGAAAGCTAA 112143 >seq802 Length=201283 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 121289 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 121348 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 121349 TGAGCTATGAAAGC 121362 >seq771 Length=209772 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 104856 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 104915 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 104916 TGAGCTATGAAAGC 104929 >seq259 Length=460645 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 257459 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 257518 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 257519 TGAGCTATGAAAGC 257532 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 257320 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 257379 Query 79684 TGAGCTACGAAAGCAAA 79700 | ||||| |||||| || Sbjct 257380 TAAGCTATGAAAGCTAA 257396 >seq235 Length=513904 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 249138 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 249079 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 249078 TGAGCTATGAAAGC 249065 >seq108 Length=584351 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 270599 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 270658 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 270659 TGAGCTATGAAAGC 270672 >seq810 Length=353309 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/75 (87%), Gaps = 2/75 (3%) Strand=Plus/Plus Query 79625 TGCTTTCGAT-GAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||||| || ||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 192151 TGCTTTCCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 192210 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 192211 CTGAGCTATGAAAGC 192225 >seq160 Length=609282 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 79627 CTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAATTG 79685 ||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| || Sbjct 364225 CTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAACTG 364284 Query 79686 AGCTACGAAAGC 79697 ||||| |||||| Sbjct 364285 AGCTATGAAAGC 364296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547028414355200