Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1436 147 1e-30 seq933 129 4e-25 seq322 125 4e-24 seq1740 111 1e-19 seq1642 102 5e-17 seq1039 102 5e-17 >seq1436 Length=88924 Score = 147 bits (162), Expect = 1e-30 Identities = 175/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | |||||| ||| || ||||| ||||| ||||| | Sbjct 7265 GCCGCCACGGAGACGGAGAACGAGATGGAGTGTGGATTCTTTTTGGATGTTGTAATCGGC 7324 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || |||||||||||||||| ||||| || || | |||||| ||||| || || Sbjct 7325 AAGAGTGCGGCCGTCTTCAAGTTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGG 7384 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||| ||||||||| ||| ||| | ||| ||| | || ||||| | || | Sbjct 7385 AATTCCTTCCTTGTCTTGGAT-TTTGGCTTTGACGTTGTCGATGGTGTCAGAGGATTCTA 7443 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 | || | |||||| ||||| ||||||| ||||||||||| ||||||||| |||| Sbjct 7444 CCTCTAGGGTTATGGTTTTGCCGGTTAGGGTTTTCACAAAGATCTGCATGATGAT 7498 Score = 134 bits (148), Expect = 9e-27 Identities = 173/235 (74%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | ||||| ||| || ||||| ||||| ||||| | Sbjct 38992 GCCGCCACGGAGACGGAGGACGAGGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCGGC 39051 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| ||||| ||||||| |||||||| ||||| || || | |||||||||||| || || Sbjct 39052 AAGAGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTGG 39111 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||| ||||||||| ||| ||| | ||| ||| | || ||||| | || | Sbjct 39112 AATTCCTTCCTTGTCTTGGAT-TTTGGCTTTGACGTTGTCGATGGTGTCGGAGGATTCTA 39170 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 | || | |||||| ||||| |||| || |||||||| || ||||||||| |||| Sbjct 39171 CCTCTAGGGTTATGGTTTTGCCGG-TAGGGTTTTCACGAAGATCTGCATGATGAT 39224 Score = 118 bits (130), Expect = 7e-22 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || || ||||| |||||||| | ||| || || | || ||||| |||||||||||||| Sbjct 6846 TCTTTCTGAATATTATAATCAGCAAGAGTCCGTCCATCCTCAAGCTGTTTACCGGCAAAG 6905 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || ||||| || || || || | |||||||||||| ||| || | || ||| | Sbjct 6906 ATCAATCGCTGCTGATCAGGTGGAATACCCTCCTTGTCT-TGAATCTTCGCCTTCACGTT 6964 Query 34636 A-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | ||| || || ||||| || || | || ||||| || ||||| ||||| ||||| Sbjct 6965 ATCAATAGTATCAGAACTCTCAACCTCAAGAGTAATCGTCTTCCCGGTCAACGTCTTCAC 7024 Query 34695 AAAAATCTGCAT 34706 |||||||||||| Sbjct 7025 AAAAATCTGCAT 7036 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || || ||||| |||||||| | ||| || | | || ||||| |||||||||||||| Sbjct 38573 TCTTTCTGAATATTATAATCAGCAAGAGTCCTTCCATCCTCAAGCTGTTTACCGGCAAAG 38632 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || ||||| || || || || | |||||||| ||| ||| || | || || | Sbjct 38633 ATCAATCGCTGCTGATCAGGTGGAATCCCCTCCTTATCT-TGAATCTTCGCCTTCACATT 38691 Query 34636 A-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | ||| || || |||||||| || | || || || || || || ||||| ||||| Sbjct 38692 ATCAATAGTATCAGAACTCTCCACCTCAAGAGTAATAGTCTTCCCCGTCAACGTCTTCAC 38751 Query 34695 AAAAATCTGCAT 34706 |||||||||||| Sbjct 38752 AAAAATCTGCAT 38763 >seq933 Length=173040 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| ||||||||||||||| |||||||| ||||||||||| | | Sbjct 29923 CCCCCACGAAGACGCAAAACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCA 29864 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| | | ||||||||||| ||||| ||||| || | | ||| || || || || Sbjct 29863 AGTGTCCTACCATCTTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGATCGGGAGGG 29804 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| || ||| || | ||| || || ||| || ||| ||||| || Sbjct 29803 ATACCTTCCTTATC-CTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAAC 29745 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || || || ||||||||||| ||||| Sbjct 29744 CTCCAAAGTGATAGTCTTTCCTGTCAAAGTCTTCACAAAAATTTGCAT 29697 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||||||| || || ||||| || ||||| ||||| | || |||| | || || Sbjct 29678 CACCAAATGAAGGGTAGATTCCTTCTGGATGTTGTAATCAGCTAGGGTTCTTCCATCCTC 29619 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 |||||| || || ||||| || | | ||| || || || || | || ||||| || Sbjct 29618 AAGTTGCTTCCCTGCAAAGATAAGCCTCTGCTGATCGGGAGGGATACCTTCCTTATCCTG 29559 Query 34617 GATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 ||||| | ||| || || ||| || ||| ||||| || || | || || || | Sbjct 29558 AATCTTG-GCTTTCACATTATCAATAGTATCTGAACTCTCAACCTCTAAAGTAATAGTCT 29500 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || ||||| || ||||||||||||||||| Sbjct 29499 TCCCTGTTAAAGTCTTCACAAAAATCTGCAT 29469 >seq322 Length=397916 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| ||||||||||||||| |||||||| ||||||||||| | | Sbjct 311847 CCCCCACGAAGACGCAAAACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCA 311906 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || |||||||| ||||| ||||| || | | ||| || || || || Sbjct 311907 AGGGTTCTTCCATCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGATCTGGAGGG 311966 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | |||||||| || ||| || | ||| || || ||| || ||| ||||| || Sbjct 311967 ATACCCTCCTTATC-CTGAATCTTAGCTTTCACATTATCAATAGTATCTGAACTCTCAAC 312025 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| || || || || || |||||||| ||||| Sbjct 312026 CTCTAAAGTAATAGTTTTTCCTGTCAAAGTCTTAACAAAAATTTGCAT 312073 Score = 122 bits (134), Expect = 5e-23 Identities = 162/221 (73%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 34488 AAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCG 34547 ||||||||| ||||||||||||||| |||||||| ||||||||||| | ||| |||| Sbjct 333419 AAGACGCAAAACCAAATGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCAAGGGTTCT 333478 Query 34548 CTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTC 34607 | || ||||||||||| || ||||| || | | ||| || || || || | |||||| Sbjct 333479 TCCATCCTCAAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGGGGGATTCCCTC 333538 Query 34608 CTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGG 34666 ||| || ||| || | ||| || || || || ||| ||||| || || | | Sbjct 333539 CTTATC-CTGAATCTTAGCTTTCACATTATCGATAGTATCTGAACTCTCAACCTCTAAAG 333597 Query 34667 T-TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || ||||| || || |||||||||||||| Sbjct 333598 TAAATAGTCTTTCCTGTTAAAGTCTTGACAAAAATCTGCAT 333638 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| || | |||| ||| | || || ||| ||||||||| ||||| ||||| | Sbjct 312758 GCCGCCCCTTAACCGCAGCACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCCGC 312817 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || | ||||| | ||||||||||||||| || | | || || || || || Sbjct 312818 AAGGGTGCGGCCATCTTCTAATTGTTTACCGGCAAAGATAAGCCTTTGCTGATCAGGTGG 312877 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || ||||||||| |||| || | |||||| | || || || |||||| Sbjct 312878 AATCCCTTCCTTGTCTTGGATC-TTAGCTTTAACATTGTCTATGGTATCAGAAATCTCCA 312936 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || ||||||||||| || |||||||| ||||| ||||| Sbjct 312937 CCTCAAGGGTGATGGTTTTACCGGTCAATGTTTTCACGAAAATTTGCAT 312985 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | |||||||| | || || ||| ||||||||| ||||| ||||||| | Sbjct 333868 CCACCTCTTAACCGCAACACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAATCTGCA 333927 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | |||||||||||| || || | | || || || || || Sbjct 333928 AGGGTGCGGCCATCTTCTAATTGTTTACCGGCGAAGATAAGCCTTTGCTGATCAGGTGGA 333987 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||| || | ||||||| | || || || |||||| | Sbjct 333988 ATCCCTTCCTTGTCTTGGATC-TTAGCTTTAACGTTGTCTATGGTATCAGAACTCTCCGC 334046 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||| || |||||||| | || |||||||| ||||| ||||| Sbjct 334047 CTCAAGGGTGATGGTTTTACCCATCAATGTTTTCACGAAAATTTGCAT 334094 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 ||||||||| || || ||||| || ||||| ||||||| || |||| | || || Sbjct 312320 CACCAAATGAAGGGTAGATTCCTTCTGTATGTTGTAATCTGCTAGGGTTCTTCCATCCTC 312379 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 ||||||||| || ||||| || | | ||| || || || || | ||| ||||| || | Sbjct 312380 AAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCTGGAGGGATTCCTTCCTTATC-CT 312438 Query 34617 GATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 || || | ||| || || || || ||| ||||| || || | || || || | Sbjct 312439 GAATCTTAGCTTTCACATTATCGATAGTATCTGAACTCTCAACCTCTAAAGTAATAGTCT 312498 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || ||||| || ||||||||||||||||| Sbjct 312499 TTCCTGTTAAAGTCTTCACAAAAATCTGCAT 312529 >seq1740 Length=56962 Score = 111 bits (122), Expect = 1e-19 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||||||||| || | || ||||| ||| || || ||||||||||| | Sbjct 42543 CCACCACGAAGACGCAAGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTATAATCATCA 42602 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | |||||||| || || || ||||| || | | ||| ||||| || || Sbjct 42603 AGAGTTCTGCCATCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGGTCTGGAGGG 42662 Query 34600 ACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGAT--AAAATTGTGTCTTCGCTCTCC 34656 | ||||| |||| |||| ||||| || | ||| |||||||||| ||||||| Sbjct 42663 ATACCCTCTTTGTCCTGT-ATCTTAGCCTTCA--GATTGTCAATTGTGTCTGAGCTCTCC 42719 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || | || || |||||||| || || || |||||||| || |||||| Sbjct 42720 ACCTCAATAGTAATGGTTTTACCTGTCAATGTCTTCACAAAGATTTGCATG 42770 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| || | ||| | || | ||| || ||| ||||| || ||||| ||||| | Sbjct 42999 CCGCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCGGCC 43058 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| | ||||| |||||||| || | | ||| ||||| || || Sbjct 43059 AAGGTTCGGCCATCTTCCAACTGTTTTCCGGCAAAAATGAGCCTCTGCTGGTCTGGAGGG 43118 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | |||||||||||| ||||| |||| |||||||||| |||||| || Sbjct 43119 ATACCCTCCTTGTCTTGAATCTTAGCCTTTACATTGTCAATTGTGTCTGAGCTCTCAACC 43178 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || ||||| || || | || ||||||||||||||||| Sbjct 43179 TCCAAAGTAATTGTTTTGCCTGTAAGGGTCTTCACAAAAATCTGCAT 43225 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || ||||| ||||| | | |||||| | |||||||| || || || ||||| Sbjct 42807 TCCTTCTGGATGTTGTAATCAGCCAATGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAA 42866 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || || | || |||||||| || | ||||||||||| |||||| ||||| Sbjct 42867 ATCAACCTTTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCTTTTACATTG 42926 Query 34636 AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACA 34695 ||| |||||| ||||| || |||| || || ||||| || || || || || ||| Sbjct 42927 TCAATCGTGTCTGAACTCTCAACCTCCAAAGTAATGGTTTTCCCTGTCAATGTCTTTACA 42986 Query 34696 AAAATCTGCAT 34706 ||||||||||| Sbjct 42987 AAAATCTGCAT 42997 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||| ||| ||||||||| ||||| ||||| | ||| || ||| Sbjct 21654 AGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGC 21595 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || || || ||||| || | |||||| ||||| || || | || ||| Sbjct 21594 CCATCCTCCAACTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGGATCCCTTCC 21535 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| || | |||||| | || || || ||||| ||||| | || Sbjct 21534 TTATCT-TGAATCTTGGCTTTAACATTGTCTATGGTATCAGAACTCTCAACTTCGAGAGT 21476 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||||||| || | || || ||||| || ||||| Sbjct 21475 AATGGTTTTACCAGTGAGGGTCTTGACAAAGATTTGCAT 21437 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| || | ||| ||||| |||||| |||||||| || || | | Sbjct 42087 CCACCACGAAGGCGCAAAACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCA 42146 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | || || | ||| || || ||||| || || | ||| || || || || Sbjct 42147 AGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 42206 Query 34600 ACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || ||| | || || || |||||||||| || || | Sbjct 42207 ATTCCCTCCTTGTCCTGT-AT-TTTGGCCTTGACATTATCAATTGTGTCTGAACTTTCTA 42264 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || || || || |||||||| || ||||| Sbjct 42265 CCTCTAAGGTAATGGTCTTTCCAGTCAAGGTCTTCACAAAGATTTGCAT 42313 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || | ||| | || | ||| || ||| ||||| || ||||| ||||| | Sbjct 22120 GCCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGC 22061 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | ||||| | ||||| |||||||| || || | ||||| || || || Sbjct 22060 CAAGGTCCGGCCATCTTCCAACTGTTTCCCGGCAAAAATCAACCTTTGTTGATCTGGGGG 22001 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||||| | || || | ||| |||||| |||||| | Sbjct 22000 AATACCCTCCTTGTCCTGAATCTTA-GCCTTCACATTGTCAATAGTGTCTGAGCTCTCAA 21942 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||||| || || ||||| | || ||||||||||||||||| Sbjct 21941 CCTCCAAAGTTATTGTCTTTCCGGTAAGAGTCTTCACAAAAATCTGCAT 21893 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||| | || | || || ||| ||| || |||||||||||||| | Sbjct 42315 CCTCCCCTCAGACGAAGGACAAGGTGAAGGGTGAACTCTTTCTGAATGTTATAATCAGCC 42374 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| || || || || ||||| || || | || ||||| || || Sbjct 42375 AAAGTCCGGCCATCTTCCAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGGG 42434 Query 34600 ACTCCCTCCTTGTC-TGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | || || ||||| ||| ||||| || || || | ||| |||||| |||||| | Sbjct 42435 ATACCTTCTTTGTCCTGT-ATCTTG-GTCTTCACATTGTCAATAGTGTCTGAGCTCTCTA 42492 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||| || || || ||||| | || ||||| ||||||||||| Sbjct 42493 CCTCCAAGGTAATAGTCTTTCCGGTAAGAGTCTTCACGAAAATCTGCAT 42541 Score = 91.5 bits (100), Expect = 9e-14 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || | ||| | || | ||| || ||| ||||| || ||||| ||||| | Sbjct 22347 CCTCCCCTCAAACGAAGGACAAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 22288 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | |||||||| || || || || || || | | ||| |||||||| || Sbjct 22287 AAGGTACGGCCATCTTCAAGCTGCTTCCCAGCGAAAATGAGTCTCTGCTGGTCCGGAGGA 22228 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||||||||| |||||| ||||| |||||||||| ||||| || Sbjct 22227 ATGCCCTCCTTGTCCTGGATCTTAGCTTTTACATTGTCAATTGTGTCTGAACTCTCAACC 22168 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| || || || || || || || || |||||||| || |||||| Sbjct 22167 TCCAAAGTGATGGTCTTCCCTGTCAAGGTCTTCACAAAGATTTGCATG 22120 >seq1642 Length=65368 Score = 102 bits (112), Expect = 5e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| || | || ||||| |||||| |||||||| || || | | Sbjct 34221 CCACCACGAAGGCGCAAAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCA 34162 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | || || | ||| || || ||||| || || | |||||| || ||||| Sbjct 34161 AGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGTTGATCTGGCGGG 34102 Query 34600 ACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || ||||| || || || || |||||| || || | Sbjct 34101 ATTCCCTCCTTGTCCTGT-AT-TTTTGCCTTCACATTATCTATGGTGTCTGAACTTTCTA 34044 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || || ||||| |||||||| || ||||| Sbjct 34043 CCTCTAAGGTAATGGTCTTTCCAGTCAACGTCTTCACAAAGATTTGCAT 33995 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || ||||| | || | || || ||| ||| || |||||||||||||| | Sbjct 33993 CCTCCCCTCAGACGAAGGACAAGGTGAAGGGTGGACTCTTTCTGAATGTTATAATCAGCC 33934 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| || || || || ||||| || || | || ||||| || || Sbjct 33933 AAAGTCCGGCCATCTTCCAGCTGCTTTCCAGCAAAAATCAATCTTTGCTGGTCTGGGGGG 33874 Query 34600 ACTCCCTCCTTGTC-TGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || ||||| ||| ||||| |||| ||| |||||| |||||| || Sbjct 33873 ATACCTTCTTTGTCCTGT-ATCTTGGCCTTTACATTGTCAATAGTGTCTGAGCTCTCTAC 33815 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || ||||| | || ||||| ||||||||||| Sbjct 33814 CTCCAAGGTAATAGTCTTCCCGGTAAGAGTCTTCACGAAAATCTGCAT 33767 >seq1039 Length=240209 Score = 102 bits (112), Expect = 5e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || | ||| | |||| ||| || ||| ||||| || ||||| ||||| | Sbjct 128848 CCTCCCCTCAAACGAAGGACCAGATGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 128907 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| || || || || ||||| || || | || || ||||| || Sbjct 128908 AAGGTACGGCCATCTTCGAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGATCCGGGGGA 128967 Query 34600 ACTCCCTCCTTGTC-TGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | ||||||||| || ||| ||||| | || || | ||| |||||| |||||| | Sbjct 128968 ATTCCCTCCTTATCCTGT-ATCTTA-GCCTTCACATTGTCAATCGTGTCTGAGCTCTCAA 129025 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||||| || |||||||| | |||||||| ||||||||||| Sbjct 129026 CCTCCAAAGTTATTGTCTTACCGGTAAGAGTTTTCACGAAAATCTGCAT 129074 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||| ||| ||||||||| || || ||||| | ||| || ||| Sbjct 129313 AGACGGAGCACCAAATGGAGCGTGGACTCCTTTTGGATATTGTAATCAGCAAGGGTACGC 129372 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || || ||||| || | |||||| ||||| || || | || ||| Sbjct 129373 CCGTCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGGATCCCTTCC 129432 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| || | ||||| | || || ||| ||||| ||||| | || Sbjct 129433 TTATCT-TGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGT 129491 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| | || || || || || ||||| Sbjct 129492 GATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 129530 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| ||||| || | || ||||| |||||| |||||||| || || | | Sbjct 128620 CCACCACGAAGGCGCAAAACAAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCA 128679 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || | | || || | ||| || || ||||| || || | ||| || || || || Sbjct 128680 AGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 128739 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||||| || ||||| || || || || || ||| || || || Sbjct 128740 ATTCCCTCCTTGTCT-TGTATTTTTGCCTTGACATTATCGATCGTATCTGAACTTTCTAC 128798 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| || || || || || || || || |||||||| |||||||| Sbjct 128799 CTCCAATGTAATGGTCTTTCCTGTCAAAGTCTTCACAAAGATCTGCAT 128846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314624407925792