Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq2319 333 3e-86 seq1296 141 1e-28 seq145 98.7 1e-15 seq219 89.7 6e-13 >seq2319 Length=57875 Score = 333 bits (368), Expect = 3e-86 Identities = 428/588 (73%), Gaps = 2/588 (0%) Strand=Plus/Minus Query 176512 CCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCT 176571 ||||| | || || | ||||||||| | |||| ||| | ||||| ||| || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 176572 GATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAG 176631 |||||||||||||| || || || ||||| |||||||||||| ||||||| || || ||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 176632 CACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCT 176691 || || ||||| ||||| || || || ||| | || ||||| ||||| || || || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 176692 CTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAA 176751 || ||| || |||||||| | || |||||| | | || || || || ||| Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 18343 Query 176752 AACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTA 176811 || ||||| || | ||||||| |||||| ||||| ||||| || || || |||||| Sbjct 18342 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 18283 Query 176812 GCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGA 176871 ||||| || ||||| ||||| || | |||||||| || ||| |||||| ||||| | Sbjct 18282 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGT 18223 Query 176872 AGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGT 176931 | | || |||||||| || || | || || || | ||||||||||| || | ||| Sbjct 18222 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGT 18163 Query 176932 GTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAAC 176991 | | || ||||| ||||| | || || || || || ||||| || ||| | || | Sbjct 18162 ATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGA-TTC 18104 Query 176992 TC-TGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGA 177050 || ||| || ||| || |||| ||||| |||||||||| |||||||||||||| Sbjct 18103 TCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 18044 Query 177051 AGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGC 177098 ||||||||| || ||||| ||||| || ||||| || ||||| ||||| Sbjct 18043 AGTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGC 17996 >seq1296 Length=110557 Score = 141 bits (156), Expect = 1e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || || |||||||||||||| || || || ||||| |||||||||||| ||||||| || Sbjct 75580 TTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAG 75521 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||| || ||||| ||||| || || || ||| | || ||||| ||||| || || Sbjct 75520 GCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 75461 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || ||| || |||||||| | || |||||| | | || || || Sbjct 75460 GGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACT 75401 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGAC 176798 || ||||| ||||| || | ||||||| |||||| ||||| ||||| || Sbjct 75400 ACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 75348 >seq145 Length=649883 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 5/174 (3%) Strand=Plus/Minus Query 176439 TTACATGGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGT 176498 ||||||||| || | |||||||| |||| | | || ||||| |||||||| ||| Sbjct 132356 TTACATGGGTCGTAAGTGGGAACTAAGTTTTCGTTTGGGTATGCGCCCTTGGATTGCTGT 132297 Query 176499 TGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCA 176558 |||||| || || ||||| || | || | ||||| | |||||||| | ||||| Sbjct 132296 TGCATATTCAGCTCCAGTTACTACTGCAGT-----TTTTCTTAATCTATCCAATTGGTCA 132242 Query 176559 AGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTAT 176612 ||| || | |||||||||||||| || || || |||| ||||||||||| Sbjct 132241 GGGAAGCTTTTTAGATGGTATGCCTCTGGGAATCTCTAGTACTTTCAACTTTAT 132188 >seq219 Length=535087 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 176153 TTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT-TTTATC 176211 |||| ||||||||||| | ||||| || | | || || | | ||| ||||| Sbjct 252282 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATT 252224 Query 176212 GTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGA 176271 | || || ||||| || || ||||| ||||| || |||||||| || || || | ||| Sbjct 252223 ATCGCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGA 252164 Query 176272 TCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATC 176331 |||||||| || |||||||| || || || || || | | || | || || || Sbjct 252163 TCTCTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGCGGCTATT 252104 Query 176332 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGA 176372 || | ||||| ||||| || |||||||| ||| | ||||| Sbjct 252103 GGTTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGA 252063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603287522119680