Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1206 86.0 6e-12 >seq1206 Length=122864 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 |||||||| |||||| | || | || || ||| |||||||| || ||||| |||| Sbjct 80440 ACATGAGCAATCATGCATGTCAAGAGTGCATAAGATGCAATGTTAAATGGCACGCCTAGG 80499 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 |||||||| | ||||||||||| | || || || | ||||||||| || || ||||| Sbjct 80500 CCCATGTCAGCAGATCGTTGATACATTTGACATGATAACTCCCCATTTGCCACATAGAAC 80559 Query 6737 TG 6738 || Sbjct 80560 TG 80561 Score = 86.0 bits (94), Expect = 6e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 34607 CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATG 34666 || ||||| || || ||||||||| | || || || | ||||||||||| | |||||| Sbjct 80561 CAGTTCTATGTGGCAAATGGGGAGTTATCATGTCAAATGTATCAACGATCTGCTGACATG 80502 Query 34667 GGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCAT 34726 || |||| ||||| || |||||||| ||| || || | || | |||||| |||||| Sbjct 80501 GGCCTAGGCGTGCCATTTAACATTGCATCTTATGCACTCTTGACATGCATGATTGCTCAT 80442 Query 34727 GT 34728 || Sbjct 80441 GT 80440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448108735649280