Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq37 100 2e-16 seq1436 98.7 7e-16 seq933 98.7 7e-16 seq1740 96.9 2e-15 seq1642 87.8 1e-12 seq1039 87.8 1e-12 seq322 86.0 4e-12 seq23 84.2 2e-11 >seq37 Length=1182629 Score = 100 bits (110), Expect = 2e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||||||||| || || || || || |||| || |||||| | Sbjct 293129 ATGCAAATCTTCGTGAAAACTCTCACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 293070 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| |||||| || || ||||| ||||| |||| ||| | Sbjct 293069 GACACCATCGACAAC--GTCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCTCCGGATC 293012 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 ||||||| | || || |||||||| || ||||| |||| | | | |||| | |||||| Sbjct 293011 AGCAACGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGAAGGACTCTTG-CTGATTAC 292953 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| ||| | ||| | ||| | ||| ||||||| || Sbjct 292952 AACATCCAGAAGGAGTCCACGCTTCATCTTGTTCTCCGTCTGCGTGGAGG 292903 >seq1436 Length=88924 Score = 98.7 bits (108), Expect = 7e-16 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || || || ||| || || | || || ||| | | Sbjct 7492 ATGCAGATCTTTGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCT 7433 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| |||||| ||||| ||||| ||||| |||| || | Sbjct 7432 GACACCATCGACAAC--GTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCACCTGACC 7375 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTAC 27966 |||| || | || || |||||||||||| | || |||| |||| |||| |||||||| Sbjct 7374 AGCAGCGTCTCATCTTCGCCGGAAAACAACTTGAAGACGGCCGCACTCTTG-CCGATTAC 7316 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||||||| ||| | ||| | ||| | ||| | ||||||||| Sbjct 7315 AACATCCAAAAAGAATCCACACTCCATCTCGTTCTCCGTCTCCGTGGCGGC 7265 >seq933 Length=173040 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || || |||||||| || || ||| | || || || || || Sbjct 29925 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACATTGGAGGTTGAGAGTTCC 29984 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || || |||||| || ||||| ||| |||| || | Sbjct 29985 GATACAATTGACAAT--GTGAAGGCAAAAATTCAGGATAAAGAGGGTATTCCTCCAGACC 30042 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || ||||||||||||| || || ||||| || | || | || | ||||| | Sbjct 30043 AGCAGAGGCTAATTTTTGCCGGGAAGCAGTTGGAAGATGGTCGTACTCTGGCTGATTATA 30102 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | ||||| || || |||||||| ||||||||| | | ||||| ||| Sbjct 30103 ATATCCAGAAGGAATCTACTTTGCACTTGGTTTTGAGGCTTCGTGGTGGC 30152 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/196 (70%), Gaps = 10/196 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || ||||||||||| |||||| | || || |||||| | Sbjct 30153 ATGCAAATATTTGTGAAGACCCTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCT 30212 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||||| || ||| ||| || || || || ||| |||| | Sbjct 30213 GA-----TACAATCGATAATGTGAAAGCAAAGATTCAAGATAAGGAGGGTATTCCCCCAG 30267 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || | ||||||||||| || || ||||| || | || | ||| | |||| Sbjct 30268 ACCAGCAGAGGCTTATTTTTGCCGGTAAGCAGTTGGAGGATGGTCGTACTTTGGCAGATT 30327 Query 27965 ACAACATCCAAAAAGA 27980 |||| || || ||||| Sbjct 30328 ACAATATTCAGAAAGA 30343 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| | ||||| ||| || || |||| || || || | Sbjct 29013 ATGCAAATTTTCGTGAAAACATTGACTGGCAAAACCATCACCCTTGAGGTGGAGAGTTCT 29072 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || |||| || ||| || || ||||| ||||| |||| || | Sbjct 29073 GATACCATAGACAAC--GTTAAAGCTAAGATCCAAGACAAGGAAGGGATTCCACCAGATC 29130 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||| || ||||||||||| || | |||| | | | ||||||| Sbjct 29131 AGCAAAGGCTTATCTTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACA 29190 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||| ||| ||| | || | || |||| || | |||||| Sbjct 29191 ACATCCAAAAGGAGTCCACCCTTCACCTTGTGCTGCGGTTAAGGGGCGGC 29240 >seq1740 Length=56962 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || ||||| || ||| ||||| | || || || ||| | Sbjct 43225 ATGCAGATTTTTGTGAAGACCCTTACAGGCAAAACAATTACTTTGGAGGTTGAGAGCTCA 43166 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || || || ||||| || ||| | || || | Sbjct 43165 GACACAATTGACAAT--GTAAAGGCTAAGATTCAAGACAAGGAGGGTATCCCTCCAGACC 43108 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | ||||||||||||||||| ||||| || | || | |||| ||||||||| Sbjct 43107 AGCAGAGGCTCATTTTTGCCGGAAAACAGTTGGAAGATGGCCGAACCTTGGCCGATTACA 43048 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || ||| | ||| | || | |||||| | ||||| Sbjct 43047 ACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGCGG 42999 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| |||||||| || || || || | || || || ||| | Sbjct 21893 ATGCAGATTTTTGTGAAGACTCTTACCGGAAAGACAATAACTTTGGAGGTTGAGAGCTCA 21952 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| || || || || ||||| || ||| |||| || | Sbjct 21953 GACACTATTGACAAT--GTGAAGGCTAAGATTCAGGACAAGGAGGGTATTCCCCCAGATC 22010 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| |||| ||||||||||| ||||| ||||| || | || | |||| | ||||||| Sbjct 22011 AACAAAGGTTGATTTTTGCCGGGAAACAGTTGGAAGATGGCCGGACCTTGGCTGATTACA 22070 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || || ||| | ||| | || | |||||| | || ||| Sbjct 22071 ACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGC 22120 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| ||||| |||||||| || || |||||| | || || || ||| | Sbjct 42541 ATGCAGATTTTCGTGAAGACTCTTACCGGAAAGACTATTACCTTGGAGGTAGAGAGCTCA 42482 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| | | ||| | | || |||||||||||| | || || | Sbjct 42481 GACACTATTGACAATGTGAAGACCAAGATACAG--GACAAAGAAGGTATCCCCCCAGACC 42424 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| ||||| || |||| || | || | ||| | ||||| | Sbjct 42423 AGCAAAGGTTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTATA 42364 Query 27968 ACATCCAAAAAGAG 27981 |||| || |||||| Sbjct 42363 ACATTCAGAAAGAG 42350 >seq1642 Length=65368 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| ||||| |||||||| ||||| |||||| | || || || ||| | Sbjct 33767 ATGCAGATTTTCGTGAAGACTCTTACCGGGAAGACTATTACCTTGGAGGTAGAGAGCTCA 33826 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | ||||| || || || ||| |||||||||||| | || || | Sbjct 33827 GACACTATTGACAAT--GTAAAGGCCAAGATACAGGACAAAGAAGGTATCCCCCCAGACC 33884 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| | || |||||||| ||||| || |||| || | || | ||| | ||||| | Sbjct 33885 AGCAAAGATTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTATA 33944 Query 27968 ACATCCAAAAAGAG 27981 |||| || |||||| Sbjct 33945 ACATTCAGAAAGAG 33958 >seq1039 Length=240209 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| |||||||||||||| || || || || | || || || ||| | Sbjct 129074 ATGCAGATTTTCGTGAAAACTCTTACCGGTAAGACAATAACTTTGGAGGTTGAGAGCTCA 129015 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| ||||| || || || ||| || || || || |||| ||| | Sbjct 129014 GACACGATTGACAAT--GTGAAGGCTAAGATACAGGATAAGGAGGGAATTCCCCCGGATC 128957 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| ||||| || | || || | || | |||| | ||||||| Sbjct 128956 AGCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCCGTACCTTGGCTGATTACA 128897 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || ||| | ||| |||| | |||||| | || || Sbjct 128896 ACATCCAGAAGGAATCCACCCTTCATCTGGTCCTTCGTTTGAGGGGAGG 128848 >seq322 Length=397916 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || || |||||||| || || || | || || || || | Sbjct 333409 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACTTTGGAGGTTGAGAGTTTC 333350 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || ||| |||||| || ||||| ||| |||| |||| | Sbjct 333349 GATACTATTGACAAT--GTGAAAGCAAAAATTCAGGATAAAGAGGGTATTCCTCTGGACC 333292 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || ||||||||||||| || || ||||| || | | | || | ||||| | Sbjct 333291 AGCAGAGGCTAATTTTTGCCGGCAAGCAGTTGGAAGATGGTTGTACTCTGGCTGATTATA 333232 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | ||||| || || ||| | || |||||||| | | ||||| ||| Sbjct 333231 ATATCCAGAAGGAATCTACTCTCCACCTGGTTTTGAGGCTTCGTGGTGGC 333182 >seq23 Length=202804 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || |||||||| || || || ||| || || | || || ||| | || Sbjct 5260 ATGCAAATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCC 5319 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| |||||| ||||| ||||| ||||| |||| || | Sbjct 5320 GACACCATCGACAAC--GTCAAAGCCAAAATTCAAGACAAGGAAGGAATTCCACCAGATC 5377 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 | ||||| | || || |||||||||||| | || || | || | |||| |||||||| Sbjct 5378 AACAACGTCTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTG-CCGATTAC 5436 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||||||||| ||| | ||| | ||| | ||| | || || ||| Sbjct 5437 AACATCCAAAAAGAATCCACGCTCCATCTCGTTCTCCGTCTCCGCGGAGGC 5487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355743460110048