Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1039 98.7 9e-16 seq322 95.1 1e-14 seq1436 93.3 4e-14 seq1740 82.4 7e-11 >seq1039 Length=240209 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| |||||| ||| ||||| ||||| ||||| ||||| || || |||| || Sbjct 129321 CACCAAATGGAGCGTGGACTCCTTTTGGATATTGTAATCAGCAAGGGTACGCCCGTCCTC 129380 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||| || || ||||| || |||||||||||||| |||||| | || || || | | Sbjct 129381 CAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCTGGTGGGATCCCT-TCCTTAT-CT 129438 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| | | | | | | | | | | ||||| ||| || || | ||||| | Sbjct 129439 TGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTC 129498 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || || || || || ||||| ||||||||||||| || Sbjct 129499 TTGCCGGTGAGGGTCTTAACGAAGATTTGCATCTATA 129535 >seq322 Length=397916 Score = 95.1 bits (104), Expect = 1e-14 Identities = 169/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || || ||||| || | | |||||||| || || || || Sbjct 312058 TAACAAAAATTTG--CATTCCACCTCTCAATCTAAGTACCAAATGAAGGGTAGATTCCTT 312115 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||||| || ||||| || || |||| | | || ||||||||||| || ||||| ||||| Sbjct 312116 CTGTATGTTGTAATCAGCTAGGGTTCTTCCATCCTCAAGCTGTTTCCCTGCAAAGATAAG 312175 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 | |||||| || | || | | |||||| ||| || || ||| | | | | Sbjct 312176 CCTCTGCTGATCTGGAGGGATTCCCTCTTTATCCTGAATCTTAGCTTTCACATTATCGAT 312235 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 ||||| ||| || |||| || ||| ||||||| |||| || |||||||| || Sbjct 312236 AGTATCTGAACTCTCAACCTCCAAAGTAATAGTTTTTCCTGTCAAAGTCTTAACAAAAAT 312295 Query 39279 TTGCAT 39284 |||||| Sbjct 312296 TTGCAT 312301 >seq1436 Length=88924 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| |||||||| || || ||||||||||| || || |||| ||||| || Sbjct 7289 ATGGAGTGTGGATTCTTTTTGGATGTTGTAATCGGCAAGAGTGCGGCCGTCTTCAAGTTG 7348 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||| || || || || |||||||||||||| | || | | || ||||| |||||| Sbjct 7349 TTTTCCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATTCCTTCCTTGTCTTGGATTTT 7408 Query 39201 CTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCG 39259 ||||| ||| | | | || || || || || || | || || |||| || | Sbjct 7409 GGCTTTGA-CGTTGTCGATGGTGTCAGAGGATTCTACCTCTAGGGTTATGGTTTTGCCGG 7467 Query 39260 TCAGCGTTTTAACAAAGATTTGCAT 39284 | || ||||| |||||||| ||||| Sbjct 7468 TTAGGGTTTTCACAAAGATCTGCAT 7492 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | || || | ||| ||||| |||||| |||||| || ||||||||||| ||| Sbjct 38765 CCTCCACGCAACCGAAGCACTAAATGAAGCGTGGACTCTTTCTGGATATTATAATCCGCA 38824 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||| | || || | || || || ||||| || | |||||||| || | || Sbjct 38825 AGAGTTCTCCCATCTTCCAATTGCTTCCCTGCAAAGATCAATCGCTGCTGATCAGGAGGG 38884 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | ||||| ||| || ||| || | ||| | | | || ||| || || || Sbjct 38885 ATTCCTTCTTTATCCTGAATCTTCGCCTTCA-CGTTGTCGATTGTGTCGGAGGATTCAAC 38943 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| ||||||| || || ||||| |||||||||||||| Sbjct 38944 TTCGAGTGTGATGGTTTTTCCAGTTAGGGTTTTGACAAAGATTTGCAT 38991 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/192 (71%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 |||||||| || || ||||||||||| ||||| |||| || || ||||| || || || Sbjct 39029 TCTTTTTGGATGTTGTAATCGGCAAGAGTTCGGCCGTCTTCGAGTTGTTTTCCGGCGAAG 39088 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||| ||||| | || | | || ||||| |||||| ||||| ||| Sbjct 39089 ATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATTTTGGCTTTGA-CGTT 39147 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || ||| || || || || | || || |||| || || || ||||| || Sbjct 39148 GTCGATGGTGTCGGAGGATTCTACCTCTAGGGTTATGGTTTTGCCGGT-AGGGTTTTCAC 39206 Query 39273 AAAGATTTGCAT 39284 ||||| ||||| Sbjct 39207 GAAGATCTGCAT 39218 >seq1740 Length=56962 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||| || ||| ||| ||||| || || ||||| ||||| || || | Sbjct 43800 CGGAAAACCAAATGGAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGGGTACGACCA 43859 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGG 39172 || || ||||| || || ||||| || |||||||||||||||| Sbjct 43860 TCCTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCGG 43902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429402032974112