Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1436 132 3e-26 seq23 131 1e-25 seq1642 123 2e-23 seq1039 111 1e-19 seq276 109 4e-19 seq1740 107 1e-18 seq933 104 2e-17 seq322 104 2e-17 seq37 98.7 7e-16 >seq1436 Length=88924 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| |||||||| || |||||||| ||||| ||||||||||| ||| | Sbjct 7264 ATGCAAATCTTCGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCT 7205 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| || |||||||| | || || ||||| Sbjct 7204 GACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATTCCTCCTGATCAG 7145 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || ||||| || || ||| ||||||| | | ||| | | ||||| || Sbjct 7144 CAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAAT 7085 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || |||||||| || | ||||| ||| | |||||||| || ||| Sbjct 7084 ATCCAGAAAGAGTCTACGCTTCATTTGGTTCTTAGGTTGCGTGGTGGA 7037 Score = 132 bits (146), Expect = 3e-26 Identities = 149/198 (75%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || ||||| || || || || || || ||| | Sbjct 39218 ATGCAGATCTTCGTGAAAACCCT-ACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCC 39160 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| ||||| ||||| ||||| | || ||||| ||| Sbjct 39159 GACACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCACCAGACCAA 39100 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| |||||||| ||||||| || ||| | | |||||||||| Sbjct 39099 CAGCGTCTCATCTTCGCCGGAAAACAACTCGAAGACGGCCGAACTCTTGCCGATTACAAC 39040 Query 23791 ATACAAAAAGAGTCCACA 23808 || |||||||| |||||| Sbjct 39039 ATCCAAAAAGAATCCACA 39022 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || |||||||| || || ||||| || || || || || || ||| | Sbjct 7492 ATGCAGATCTTTGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCT 7433 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| ||||| ||||| ||||| | || || || || Sbjct 7432 GACACCATCGACAACGTCAAAGCCAAAATCCAAGACAAGGAAGGAATTCCACCTGACCAG 7373 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| |||||||| ||||||| |||||| | | |||||||||| Sbjct 7372 CAGCGTCTCATCTTCGCCGGAAAACAACTTGAAGACGGCCGCACTCTTGCCGATTACAAC 7313 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || |||||||| |||||| | ||| | ||| Sbjct 7312 ATCCAAAAAGAATCCACACTCCATCTCGTT 7283 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||||| || |||||||| ||||| ||||||||||| ||| | Sbjct 38991 ATGCAAATCTTTGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCC 38932 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || ||| || |||||||| | || || ||||| Sbjct 38931 GACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCTGATCAG 38872 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| || || ||||| || || ||| ||||||| | | ||| | | ||||| || Sbjct 38871 CAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAAT 38812 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||||||||| | |||||||| | ||||||| ||||| Sbjct 38811 ATCCAGAAAGAGTCCACGCTTCATTTAGTGCTTCGGTTGCGTGGAGG 38765 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || | || || || ||||| ||||| || ||||| | Sbjct 7037 AATGCAGATTTTTGTGAAGACGTTGACCGGGAAGACGATTACTCTTGAGGTTGAGAGTTC 6978 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| | | || || ||| ||||| || ||| | || || ||||| Sbjct 6977 TGATACTATTGATAACGTGAAGGCGAAGATTCAAGACAAGGAGGGTATTCCACCTGATCA 6918 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || |||||||| ||||| || || || | ||| ||| | | ||||| || Sbjct 6917 GCAGCGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGACGGACTCTTGCTGATTATAA 6858 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||| || ||| | || | ||| | ||| | || || || Sbjct 6857 TATTCAGAAAGAATCTACACTCCACCTTGTTCTCAGGCTCCGTGGTGG 6810 >seq23 Length=202804 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| |||||||| || || ||||| || || || || || || ||| | Sbjct 5260 ATGCAAATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCC 5319 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| |||||| ||||| ||||| | || ||||||||| Sbjct 5320 GACACCATCGACAACGTCAAAGCCAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAA 5379 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || ||||| |||||||| ||||| | || ||| | | |||||||||| Sbjct 5380 CAACGTCTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTGCCGATTACAAC 5439 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || |||||||| ||||| | ||| | ||| Sbjct 5440 ATCCAAAAAGAATCCACGCTCCATCTCGTT 5469 >seq1642 Length=65368 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| |||||||| || || || ||||||||||||||||| | Sbjct 53934 ATGCAAATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCA 53993 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| |||| | || | || ||||||||||| | || ||||| || Sbjct 53994 GATACCATAGACAATGTTAAGGCCAAGA-TTCAGGACAAAGAAGGCATTCCACCAGACCA 54052 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || ||||| || ||||| || || || | || ||||||| |||||||| Sbjct 54053 ACAGAGGCTCATCTTTGCTGGAAAACAGCTTGAGGATGGTCGGACTTTAGCTGATTACAA 54112 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || |||||||| || | ||||| || Sbjct 54113 CATTCAGAAAGAGTCTACCCTCCATTTGGT 54142 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || || || || || || | || || || | | Sbjct 33767 ATGCAGATTTTCGTGAAGACTCTTACCGGGAAGACTATTACCTTGGAGGTAGAGAGCTCA 33826 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||| | |||| || || |||||||||||| | || ||||| || Sbjct 33827 GACACTATTGACAATGTAAAGGCCAAGATACAGGACAAAGAAGGTATCCCCCCAGACCAG 33886 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || ||||| || || || |||||||| | || ||||| | ||||| ||| Sbjct 33887 CAAAGATTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTATAAC 33946 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 33947 ATTCAGAAAGAGTCCAC 33963 >seq1039 Length=240209 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| |||||||| || || || ||||||||||||||||| | Sbjct 129530 ATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCA 129471 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| |||| | || ||| || || ||||| | || ||||| || Sbjct 129470 GATACCATAGACAATGTTAAGGC-CAAGATTCAAGATAAGGAAGGGATCCCACCAGACCA 129412 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || ||||| |||| || || | | |||||||| Sbjct 129411 GCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGACGGGCGTACCCTTGCTGATTACAA 129352 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| |||||||| | ||||| || Sbjct 129351 TATCCAAAAGGAGTCCACGCTCCATTTGGT 129322 >seq276 Length=436033 Score = 109 bits (120), Expect = 4e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||||||||| || ||||| || ||||| ||||| || Sbjct 192252 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACGATAACCCTCGAGGTTGAATCT 192311 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | || | | || ||||| ||||| ||||| | || || ||| Sbjct 192312 TCTGATACCATCGACAACGTCAAGGCCAAAATCCAAGACAAGGAAGGAATTCCACCGGAT 192371 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| || | || || ||||| ||||| || ||||||| |||||| | | ||| ||| Sbjct 192372 CAACAACGACTCATCTTCGCCGGAAAACAGCTTGAAGACGGCCGCACTCTTGCCGACTAC 192431 Query 23788 AACATACAAAAAGAGTCCAC 23807 || || || || || || || Sbjct 192432 AATATCCAGAAGGAATCAAC 192451 >seq1740 Length=56962 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || || || ||||| || || ||| | || ||||| | | Sbjct 21893 ATGCAGATTTTTGTGAAGACTCTTACCGGAAAGACAATAACTTTGGAGGTTGAGAGCTCA 21952 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || | || ||| ||||| || ||| | || |||||||| Sbjct 21953 GACACTATTGACAATGTGAAGGC-TAAGATTCAGGACAAGGAGGGTATTCCCCCAGATCA 22011 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| ||||| ||||||| | || || || | |||||||| Sbjct 22012 ACAAAGGTTGATTTTTGCCGGGAAACAGTTGGAAGATGGCCGGACCTTGGCTGATTACAA 22071 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 22072 CATCCAGAAGGAATCCAC 22089 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || ||||| || || ||||| || ||| | || ||||| | | Sbjct 43225 ATGCAGATTTTTGTGAAGACCCTTACAGGCAAAACAATTACTTTGGAGGTTGAGAGCTCA 43166 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | |||| || ||| ||||| || ||| | || ||||| || Sbjct 43165 GACACAATTGACAATGTAAAGGCTAAGATTCAAGACAAGGAGGGTATCCCTCCAGACCAG 43106 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || |||||||| ||||| ||||||| | || || || | |||||||||| Sbjct 43105 CAGAGGCTCATTTTTGCCGGAAAACAGTTGGAAGATGGCCGAACCTTGGCCGATTACAAC 43046 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 43045 ATCCAGAAGGAATCCAC 43029 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || |||||||| || ||||| || |||||||||||||| | Sbjct 21437 ATGCAAATCTTTGTCAAGACCCTCACTGGTAAAACCATTACTCTCGAAGTTGAGAGTTCT 21496 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| ||||| | || | || || || ||||| | || ||||| || Sbjct 21497 GATACCATAGACAATGTTAAAGCCAAGA-TTCAAGATAAGGAAGGGATCCCACCAGACCA 21555 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || |||| || | || || | | |||||||| Sbjct 21556 GCAGCGTCTGATTTTTGCTGGAAAGCAGTTGGAGGATGGGCGTACCCTTGCTGATTACAA 21615 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| ||||| |||||||| | ||||| || Sbjct 21616 CATCCAAAAGGAGTCCACCCTCCATTTGGT 21645 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || || || ||||| || || || | || || || | | Sbjct 42541 ATGCAGATTTTCGTGAAGACTCTTACCGGAAAGACTATTACCTTGGAGGTAGAGAGCTCA 42482 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| ||| | || || || | | |||||||||||| | || ||||| || Sbjct 42481 GACACTATTGACAATGTGAAGACCAAGA-TACAGGACAAAGAAGGTATCCCCCCAGACCA 42423 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || ||||| || || || |||||||| | || ||||| | ||||| || Sbjct 42422 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTGGAAGATGGCCGGACTTTGGCTGATTATAA 42363 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||| ||| Sbjct 42362 CATTCAGAAAGAGTTCAC 42345 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || |||||||| ||||| || ||||| || || || || | | Sbjct 21665 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCA 21724 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | || |||||||| || | || ||||| || Sbjct 21725 GACACCATAGACAATGTCAAGGCCAAGA-TTCAAGACAAAGAGGGAATCCCACCAGACCA 21783 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || ||||| || || || || ||||| | | || |||| |||||||| Sbjct 21784 GCAAAGGTTGATTTTTGCTGGAAAGCAGCTCGAAGATGGCAGGACCTTAGCTGATTACAA 21843 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| Sbjct 21844 CATCCAGAAAGAATCCAC 21861 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || |||| ||||||| || || || | |||||||||||||| | Sbjct 44014 ATGCAAATATTTGTTACGGCCCTCACTGGCAAGACTGTTACTCTCGAAGTTGAGAGTTCA 43955 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || || || ||| |||| | || | || || || ||||| | | | || || Sbjct 43954 GATACCGTAGACAATGTTAAGGCCAAGA-TTCAAGATAAGGAAGGGATCCTATCCGACCA 43896 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || ||||| || || || ||||| || | || || | | |||||||| Sbjct 43895 GCAGCGTCTGATTTTTGCTGGAAAGCAGCTGGAGGATGGTCGTACCCTTGCTGATTACAA 43836 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||| ||||| |||||||| | ||||| ||||| Sbjct 43835 CATCCAAAAGGAGTCCACCCTCCATTTGGTTTT 43803 >seq933 Length=173040 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| ||| | || |||||||| ||||| || || ||||| ||| | Sbjct 29241 ATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCC 29300 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | |||||||| || | || || ||||| Sbjct 29301 GATACAATTGATAATGTCAAGGCCAAGA-TCCAGGACAAAGAGGGCATCCCTCCTGATCA 29359 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || ||||| || || | | | || ||| |||||||| Sbjct 29360 GCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAA 29419 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || || || || | ||||| || | || ||| |||| ||| Sbjct 29420 CATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGA 29468 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| | || || ||||| ||||| || || || || | Sbjct 29013 ATGCAAATTTTCGTGAAAACATTGACTGGCAAAACCATCACCCTTGAGGTGGAGAGTTCT 29072 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || || ||||| | || | | ||||| ||||| | || |||||||| Sbjct 29073 GATACCATAGACAACGTTAAAGCTAAGA-TCCAAGACAAGGAAGGGATTCCACCAGATCA 29131 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || ||||| || |||||| ||||||| | ||||| | | |||||||| Sbjct 29132 GCAAAGGCTTATCTTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACAA 29191 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 29192 CATCCAAAAGGAGTCCAC 29209 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || | || || || || || ||| | || ||||| | Sbjct 29468 AATGCAGATTTTTGTGAAGACTTTAACAGGGAAGACTATTACTTTAGAGGTTGAGAGTTC 29527 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| |||| ||| | ||| | || ||| || || |||||| | || || |||| Sbjct 29528 AGATACTATTGATAATGTGAAAGC-CAAGATTCAGGATAAGGAAGGTATCCCTCCCGATC 29586 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| || || ||||| || || | | | || ||| ||||||| Sbjct 29587 AGCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACA 29646 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || || || || || | ||||| || | || ||| |||| ||| Sbjct 29647 ACATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGA 29696 >seq322 Length=397916 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| ||| | || |||||||| ||||| || || ||||| ||| | Sbjct 312757 ATGCAGATATTCGTTAAGACCTTGACTGGAAAAACCATCACCCTTGAGGTTGAATCCTCC 312698 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | |||||||| || | || || ||||| Sbjct 312697 GATACAATTGATAATGTCAAGGCCAAGA-TCCAGGACAAAGAGGGCATCCCTCCTGATCA 312639 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || ||||| || || | | | || ||| |||||||| Sbjct 312638 GCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAA 312579 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || || || || | ||||| || | || ||| |||| ||| Sbjct 312578 CATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGA 312530 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| ||| | || || |||| ||||| || || ||||| ||| | Sbjct 333866 ATGCAGATATTCGTTAAGACCTTGACTGGCAAAATTATCACCCTTGAGGTTGAATCCTCA 333807 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || | | |||||||| || | || || ||||| Sbjct 333806 GATACAATTGATAATGTCAAGGCCAAGA-TCCAGGACAAAGAGGGCATCCCTCCTGATCA 333748 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || ||||| || || | | | || ||| |||||||| Sbjct 333747 GCAGTGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAA 333688 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || || || || | ||||| ||| | || ||| |||| ||| Sbjct 333687 CATCCAGAAGGAATCTACCCTTCATTTGGTTCTTAGATTGAGAGGTGGA 333639 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| || | || |||||||| || ||| | || ||||| | Sbjct 312302 AATGCAAATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTGGAGGTTGAGAGTTC 312243 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| | || ||| | ||| | || | || || ||||| || | || ||||||| Sbjct 312242 AGATACTATCGATAATGTGAAAGCTAAGA-TTCAGGATAAAGAGGGAATCCCTCCAGATC 312184 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| || ||||| || || || | | | || ||| ||||||| Sbjct 312183 AGCAGAGGCTTATCTTTGCAGGGAAACAGCTTGAGGATGGAAGAACCCTAGCTGATTACA 312124 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||| || || || || | ||||| || | || ||| |||| ||| Sbjct 312123 ACATACAGAAGGAATCTACCCTTCATTTGGTACTTAGATTGAGAGGTGGA 312074 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || | || ||||| || || ||| | || ||||| | Sbjct 312530 AATGCAGATTTTTGTGAAGACTTTAACAGGAAAGACTATTACTTTAGAGGTTGAGAGTTC 312471 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| | || ||| | ||| | || | || || || ||||| | || ||||||| Sbjct 312470 AGATACTATCGATAATGTGAAAGCTAAGA-TTCAGGATAAGGAAGGAATCCCTCCAGATC 312412 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| || |||||||| || || | | | || ||| ||||||| Sbjct 312411 AGCAGAGGCTTATCTTTGCAGGGAAACAACTTGAGGATGGAAGAACCCTAGCAGATTACA 312352 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||||| || || || || | ||||| || | || ||| |||| ||| Sbjct 312351 ACATACAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGA 312302 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| | || || ||||| ||||| || || || || | Sbjct 312985 ATGCAAATTTTCGTGAAAACATTGACCGGTAAAACCATCACCCTTGAGGTGGAGATTTCT 312926 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| ||||| | || | | ||||| ||||| | || || ||||| Sbjct 312925 GATACCATAGACAATGTTAAAGCTAAGA-TCCAAGACAAGGAAGGGATTCCACCTGATCA 312867 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | | || |||||||| |||||| | ||||| | ||||| | | |||||||| Sbjct 312866 GCAAAGGCTTATCTTTGCCGGTAAACAATTAGAAGATGGCCGCACCCTTGCGGATTACAA 312807 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| |||||||| Sbjct 312806 CATCCAAAAGGAGTCCAC 312789 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| ||||| ||||| || ||||| || || ||| | || ||||| Sbjct 333409 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACTTTGGAGGTTGAGAGTTTC 333350 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | ||| |||||| || || ||||| ||| | || | || || Sbjct 333349 GATACTATTGACAATGTGAAAGCAAAAA-TTCAGGATAAAGAGGGTATTCCTCTGGACCA 333291 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | |||| ||||||||||| || ||||||| | | ||| | | ||||| || Sbjct 333290 GCAGAGGCTAATTTTTGCCGGCAAGCAGTTGGAAGATGGTTGTACTCTGGCTGATTATAA 333231 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || || || | || | ||||| ||| | || || || Sbjct 333230 TATCCAGAAGGAATCTACTCTCCACCTGGTTTTGAGGCTTCGTGGTGG 333183 >seq37 Length=1182629 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| ||||| ||||| || ||||| || || || || | | Sbjct 293129 ATGCAAATCTTCGTGAAAACTCTCACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 293070 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| || || ||||| ||||| | || || ||||| Sbjct 293069 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAG 293010 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || ||||| || || ||||||||| | | ||| | | ||||||||| Sbjct 293009 CAACGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGAAGGACTCTTGCTGATTACAAC 292950 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || |||||||| | ||| | ||| | | |||| ||||| Sbjct 292949 ATCCAGAAGGAGTCCACGCTTCATCTTGTTCTCCGTCTGCGTGGAGG 292903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337896627051392