Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq520 250 2e-61 seq1210 239 4e-58 >seq520 Length=294854 Score = 250 bits (276), Expect = 2e-61 Identities = 581/868 (67%), Gaps = 11/868 (1%) Strand=Plus/Plus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 ||| || ||||| || ||||| || || || |||||||| || | | ||||| Sbjct 261801 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAATCAA 261860 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAG 4375 |||||| ||||||| ||||| | || ||| |||| |||| || | | | Sbjct 261861 TTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTTCCACAACCAAGTTCACCCAA 261920 Query 4376 CAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAA 4435 |||| ||||| ||||| || ||||| || ||||| | || | ||| ||||||| || Sbjct 261921 TAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAACCAA 261980 Query 4436 TCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTA 4494 |||| || ||||| | | ||| ||| || || || || || | | Sbjct 261981 AG-CACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGAACAA 262039 Query 4495 TATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAA-TAAACACGCA 4553 || ||| | |||| | |||| ||| || | | | || || |||||| ||| Sbjct 262040 TAGTTTTCACACGCTCTTCACTAAGTTTCTTT-CTCAAAAGCGAATAAAGTAAACAAGCA 262098 Query 4554 AAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGC 4613 ||||||||||| | ||||||||| | ||| || ||||| ||||| ||||| || ||| Sbjct 262099 AAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGC 262158 Query 4614 ATTAAACCTCTCTTTTTAAGCCAAAATATAG--CGGCAAATGACCCAGAAAAGAATATGC 4671 |||||||| | |||||||||||||| || | | | || | | |||||| |||| | Sbjct 262159 ATTAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACTACCGGAGAAAA--ATATAC 262216 Query 4672 CTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCC 4731 |||| || ||||| || || | || | || || | | || |||| Sbjct 262217 CTTCAACACAAGCAAAAGCAACGATTCTTTCAGCAAATGAATCAGATGAATCG---ATCC 262273 Query 4732 ATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA 4791 |||| | ||||| | |||||| || || || ||||| |||| || || | ||||| Sbjct 262274 ATTTCATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGAAATA 262333 Query 4792 ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAG 4851 | | | ||||| | | || | |||||||| || || | || ||||||||||||| Sbjct 262334 AACGATTCTTTTCGATAGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAG 262393 Query 4852 AATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAA 4911 |||| || ||||| || || ||||| || ||||||||| | || || | ||||||| Sbjct 262394 AATGAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTTGAA 262453 Query 4912 CTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAA 4971 |||| || |||||| | | | || || ||||||||||| ||| ||||| | Sbjct 262454 CTTCTTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCAAAGA 262513 Query 4972 ACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031 | || | ||| || || || |||| ||||| | | || || |||||||| || | Sbjct 262514 AAGCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGAGGAA 262573 Query 5032 AATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACA 5091 ||||| | | ||| |||||||| | ||||| || || ||||| ||||||||||||| Sbjct 262574 GATCTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTGTACA 262633 Query 5092 TAGACCAAATATCAGGATACTGAATCGG 5119 | |||||| | ||| || |||||||| Sbjct 262634 TTTCCCAAATTTTAGGGTATTGAATCGG 262661 >seq1210 Length=122563 Score = 239 bits (264), Expect = 4e-58 Identities = 612/918 (67%), Gaps = 23/918 (3%) Strand=Plus/Minus Query 4256 TTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATT 4315 ||| || || ||| || ||||| || || || |||||||| || | | |||||| Sbjct 43128 TTTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 43069 Query 4316 TTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCT-ACA- 4373 ||||| ||||||| ||||| | || ||| ||||| ||| |||| ||| Sbjct 43068 ATCCATCCAATCAAAAGGATTCTGAACATTATAAA--TTTTCCCACAACCAAGCTCACAC 43011 Query 4374 AGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATT 4433 | ||||| ||||| ||||| || |||||||| ||||| | || | || ||||||| | Sbjct 43010 AACAATCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACT 42951 Query 4434 AAT-CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGAT 4492 || | || ||| ||||| | | ||| ||| || || || || || | Sbjct 42950 AAAGCGCA-AGGAAGCGCTTCGCAAACAAATTCTCTCTCGATCTCAACAGCATCGCGCAC 42892 Query 4493 TATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAAT-AAACACG 4551 || || | |||| |||| ||| || | | | || ||| ||||| | Sbjct 42891 AATCGTCTTCACACGCTCTTCGCTAAGTTTCTTT-CTCAAAAGCGAATAAATCAAACAAG 42833 Query 4552 CAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGG 4611 ||||||||||||| | |||||||| | ||| || ||||| ||||| ||||| || | Sbjct 42832 CAAAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAG 42773 Query 4612 GCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGC 4671 |||||||||| | ||||||||||| || || || || ||||| || ||||| | Sbjct 42772 GCATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAGAAACTTCCAGAGAAAAATATAC 42713 Query 4672 CTTCTACGGCGGCAAACGCTACTAA----TCGGGACCCGAACGAGCTGGCTTTGTCTTTA 4727 |||| || ||||| || || | || | | ||| || || | Sbjct 42712 CTTCAACACAAGCAAAAGCAACGATCCTTTCAGCAAATGAATCAGATGAATCG------- 42660 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 |||||||| | ||||| | |||||| || ||| || ||||| || | || || | | Sbjct 42659 ATCCATTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCAATTGCATGA 42600 Query 4788 AATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATT 4847 || || | | || |||| || || | |||||||| || || | || ||||||||| Sbjct 42599 AACAAACGATTCTTCTCAACTGAATCATTGATATAAGTCTCAATCAAGAGACTATACATT 42540 Query 4848 TCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTAC 4906 |||||||| ||||| || || || ||||| |||||||| |||||| | || |||| || Sbjct 42539 TCAGAATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCA-CGCGCCTCTGAGAC 42481 Query 4907 TTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGC 4966 ||||||||| || |||||| || | | || || || || ||||| || || Sbjct 42480 TTGAACTTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGAAGCGGC 42421 Query 4967 AAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTG 5026 ||| || || | ||| || || ||||||| ||||| | | || || |||||||| Sbjct 42420 AAAGAAGGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTTCCAGTG 42361 Query 5027 GGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTT 5086 | | ||||| | |||||| |||||||| | ||||| || || ||||| |||||||| Sbjct 42360 ATGAAGATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTTTT 42301 Query 5087 GTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACA-AATCTGTTGTCGTTAG 5145 |||||| ||| || | ||| || ||||| || | || ||| || | || ||| | Sbjct 42300 GTACATTTCCCAGATTTTAGGGTATTGAATTGGGAACAT-ACAGAAACGGTCAGGGTTTG 42242 Query 5146 GTGTAAGAAGCGGTTCTT 5163 | | ||||| ||||||| Sbjct 42241 GGGCGAGAAGTGGTTCTT 42224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426906867212192