Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1210 275 9e-69 seq520 262 5e-65 seq92 111 2e-19 seq6 91.5 2e-13 >seq1210 Length=122563 Score = 275 bits (304), Expect = 9e-69 Identities = 590/874 (68%), Gaps = 12/874 (1%) Strand=Plus/Minus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| ||||| || || || || ||||| ||||| |||||||| || | | || || Sbjct 43128 TTTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 43069 Query 47909 TTCCATAAAATCAAATGGATTAACTG--CATTATAAAtttttttAAATCCTAATTCTGAA 47966 ||||| ||||||| ||||| ||| ||||||||||||| | | || | || | Sbjct 43068 ATCCATCCAATCAAAAGGATT--CTGAACATTATAAATTTTCCCACAACCAAGCTCACAC 43011 Query 47967 ATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT- 48025 | || |||||| ||||| || || ||||| |||||| |||| ||||||||| | Sbjct 43010 AACAATCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACT 42951 Query 48026 -AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTA 48084 ||| || || || || || || ||| ||| ||||| |||||||| | Sbjct 42950 AAAGCGCAA--GGAAGCGCTTCGCAAACAAATTCTCTCTCGATCTCAACAGCATCGCGCA 42893 Query 48085 TTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATG 48144 |||| | || || || || || | |||| | | | || ||||| | Sbjct 42892 CAATCGTCTTCACACGCTCTTCGCTAAGTTTCTTTCTCAAAAGCGAATAAATCAAACAAG 42833 Query 48145 CAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGG 48204 |||||||||||||||| ||||| || | ||| | ||||| ||||| || | ||| | Sbjct 42832 CAAAATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAG 42773 Query 48205 GCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGC 48264 |||||| ||||||||||| ||||| || ||||| |||| |||||| || ||||| | Sbjct 42772 GCATTAAACCACGTTTTTTAAGCCAGAAAATTGCACAGAAACTTCCAGAGAAAAATATAC 42713 Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT--ATCCA 48322 |||| || ||||| || | || || || | || || | | || | ||||| Sbjct 42712 CTTCAACACAAGCAAAAGCAACGA-TC-CTTTCAGCAAATGAATCAGATGAATCGATCCA 42655 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 ||||||||||| ||||| | | |||||| || ||||| || |||| ||| | Sbjct 42654 TTTCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCAATTGCATGAAACAA 42595 Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 | || || ||| ||| || | ||||| || || || |||||||||||||| || Sbjct 42594 ACGATTCTTCTCAACTGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGA 42535 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 |||||||| || ||||| ||||| |||||||| ||| | ||| |||| || || || Sbjct 42534 ATGAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGCGCCTCTGAGACTTGAAC 42475 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 || | |||| | | || | |||||| || || || || ||| ||||| || Sbjct 42474 TTCTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGAAGCGGCAAAGAA 42415 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 || | || ||| ||||| | |||| | || || || ||||||| || | Sbjct 42414 GGCAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTTCCAGTGATGAAG 42355 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 ||||| |||| ||| |||||||| || ||||| || || || || |||||||| ||||| Sbjct 42354 ATCTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTTTTGTACAT 42295 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATA 48716 | ||| || | | |||||| |||||||| ||| Sbjct 42294 TTCCCAGATTTTAGGGTATTGAATTGGGAACATA 42261 >seq520 Length=294854 Score = 262 bits (290), Expect = 5e-65 Identities = 586/874 (67%), Gaps = 12/874 (1%) Strand=Plus/Plus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| |||||||| || || || ||||| ||||| |||||||| || | | ||| || Sbjct 261801 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAATCAA 261860 Query 47909 TTCCATAAAATCAAATGGATTAACTG--CATTATAAAtttttttAAATCCTAATTCTGAA 47966 |||||| ||||||| ||||| ||| |||||||||||||| | | || | ||| Sbjct 261861 TTCCATCCAATCAAAAGGATT--CTGAACATTATAAATTTTTCCACAACCAAGTTCACCC 261918 Query 47967 ATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT- 48025 | | |||||| ||||| || || |||||| |||||| |||| |||||||| | Sbjct 261919 AATAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAACC 261978 Query 48026 -AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTA 48084 ||| || || || || || || ||| ||| || || || ||||| | Sbjct 261979 AAAGCACAA--GGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGAA 262036 Query 48085 TTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATG 48144 || | | | || || ||||| || | |||| | | | | |||||| | Sbjct 262037 CAATAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAG 262096 Query 48145 CAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGG 48204 |||||||||||||||||||||| || | ||| | ||||| ||||| || | ||| | Sbjct 262097 CAAAATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAG 262156 Query 48205 GCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGC 48264 |||||| ||||||||||| |||||||| |||| |||| || || || ||||| | Sbjct 262157 GCATTAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACTACCGGAGAAAAATATAC 262216 Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT--ATCCA 48322 |||| || ||||| || | | ||| || | || || | | || | ||||| Sbjct 262217 CTTCAACACAAGCAAAAGCA--ACGATTCTTTCAGCAAATGAATCAGATGAATCGATCCA 262274 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 ||||||||||| ||||| | |||||| || || || || |||| ||| | Sbjct 262275 TTTCATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGAAATAA 262334 Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 | || ||||| | ||| || | ||||| || || || |||||||||||||| || Sbjct 262335 ACGATTCTTTTCGATAGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGA 262394 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 ||||| |||||||| || ||||| || |||||||| | || || | || || || Sbjct 262395 ATGAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTTGAAC 262454 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 || | |||| | | || | |||||| ||||| || || || ||||| || Sbjct 262455 TTCTTTCATGAATCTTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCAAAGAA 262514 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 || | || ||| || || | |||| | || || || ||||||| | | Sbjct 262515 AGCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGAGGAAG 262574 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 ||||| ||| | ||| |||||||| |||||||| ||||| || || |||||||| ||||| Sbjct 262575 ATCTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTGTACAT 262634 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATA 48716 | ||| || | | |||||| || ||||| ||| Sbjct 262635 TTCCCAAATTTTAGGGTATTGAATCGGGAACATA 262668 >seq92 Length=773687 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 77902 TTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGC 77961 ||||||| |||||||| ||| |||||||| || |||||| ||| |||| ||||| Sbjct 24318 TTTCATACTGAGTATACAGCTTCTCAAATTCTTCACCCCAACAATCTGCCAAACCAGGTG 24259 Query 77962 ATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGAT 78021 |||||| ||||| | ||| ||||| | |||| || ||||| ||||||||||||| Sbjct 24258 CTTCATTGGGGCAAAACAAGGACCATACCCCATTACTCTGAACTCTGTTCATAAAGAGAT 24199 Query 78022 CAGGTATCCATAGAGCAATAAATAGATCTCG 78052 |||| | ||| || ||| ||||| |||||| Sbjct 24198 CAGGCACCCAAAGGGCATAAAATAAATCTCG 24168 Score = 100 bits (110), Expect = 4e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || |||||||| | ||| | ||| |||| ||| | || | ||||||||||| |||||| Sbjct 23836 CCCCCCTGATCAACATAACGGGCAGTGTCATTGAACACACGCAACATTGGAACAATACCA 23777 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||| || |||||||||||| ||| ||||| ||| || || || ||| || || Sbjct 23776 TTAGAAGTCCCATTTGTTCCACGAATGTAACTGCCATAGGCACGTATGTTATGAACAGAA 23717 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || ||| || | ||| || |||| ||||| || || Sbjct 23716 ACACCAATTCCTCCAGCAGATTTACTAATGACAGCACACTCCTTCAGAGTATCATAAATC 23657 Query 78339 CCCTCTATACTGTCATCCATCAT 78361 ||||| ||||| || || |||| Sbjct 23656 CCCTCAATACTATCCTCTTTCAT 23634 >seq6 Length=1263909 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||||||||| |||||||| ||||||||| |||| ||| || || ||||| ||| Sbjct 1160352 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 1160411 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGC 48238 || ||||||| ||| | ||||| ||||| ||||| || Sbjct 1160412 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGGC 1160449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694430667535360