Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq520 289 4e-73 seq1210 273 3e-68 seq92 127 3e-24 seq6 87.8 3e-12 >seq520 Length=294854 Score = 289 bits (320), Expect = 4e-73 Identities = 595/874 (68%), Gaps = 12/874 (1%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || ||||| || || || ||||| ||||| |||||||| || | | ||| || Sbjct 261801 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGTGAAATCAA 261860 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 |||||| ||||||| ||||| |||||||||||||||| | | || | ||| | Sbjct 261861 TTCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTTCCACAACCAAGTTCACCCAA 261920 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 | |||||| ||||| || || ||||| |||||| |||| |||||||| | | Sbjct 261921 TAATCTATCAGCAACAAACTCAATATATTGACTCATCAAATCACCGTTCATTCCAACCAA 261980 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC-CGATATTA 46576 || || || || || ||| ||| ||||| || ||||| ||| | | Sbjct 261981 AGCACAAGGAAGCGCTTCACAAACAAATTCTCTCTCAATTTCAACCGCATCACGA-ACAA 262039 Query 46577 TCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAA 46636 | | | | || || ||||| || | ||||| | | | | |||||| |||| Sbjct 262040 TAGTTTTCACACGCTCTTCACTAAGTTTCTTTCTCAAAAGCGAATAAAGTAAACAAGCAA 262099 Query 46637 AATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCA 46696 ||||||||||||| ||||| || | ||| | ||||| ||||| || | ||||||| Sbjct 262100 AATCACAATGAAGACCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCA 262159 Query 46697 TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTT 46756 ||| ||||| ||||| |||||||| || | |||| || || || ||||| |||| Sbjct 262160 TTAAACCACGTTTTTTAAGCCAAAAAATTGAACAGAAACTACCGGAGAAAAATATACCTT 262219 Query 46757 CTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACC--T 46814 | ||| || || || || | ||| || | || || |||| ||||||| | | | Sbjct 262220 CAACACAAGCAAAAGCAACGATTCTTTCAGC--AAATGA-ATCAG-ATGAATCGATCCAT 262275 Query 46815 TTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 || | ||||||||||| || || | |||||| || || || || |||| ||| | | Sbjct 262276 TTCATAGCCCAATCAGCTTTCTTGGCAATACAAGGAATCGTGTCAATTGCATGAAATAAA 262335 Query 46873 AAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAA 46932 || ||||| | ||| || | ||| || || || || |||||||||||||| ||| Sbjct 262336 CGATTCTTTTCGATAGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGAA 262395 Query 46933 TGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACC 46992 |||||||||||||| || ||||| || |||||||| | ||| |||| | || || Sbjct 262396 TGAATGTTTTCAATCGCGATCTGGAAACCGTAAAAGGCACGTGCCTCAGAGACTTGAACT 262455 Query 46993 TCTGTACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACTAGCAGCAAAAAA 47051 ||| | |||| ||| | ||| |||||| ||||| || || || ||||| || Sbjct 262456 TCTTTCATGAATC-TTCCGGCAAGATTCTCCAAGACTATACCGTCGGAGGCGGCAAAGAA 262514 Query 47052 TGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGAT 47111 || | || ||| || || | ||| || || || || ||||||| | | Sbjct 262515 AGCAAGAACGTGTGAGATGAAGTGACGTTCGCCGTCGGTTAGGTTGTTCCAGTGAGGAAG 262574 Query 47112 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACAT 47171 ||||| ||| | ||| |||||||| |||||||||||||| || || |||||||| ||||| Sbjct 262575 ATCTTGTGAGAGATCGACTTCTTCTGCTGTCCAGAATGAAGCTTCGGCTTTTTTGTACAT 262634 Query 47172 ATTCCATATATCACGATATTGGATCGGAAAAATA 47205 | ||| || | | | ||||| ||||| || ||| Sbjct 262635 TTCCCAAATTTTAGGGTATTGAATCGGGAACATA 262668 >seq1210 Length=122563 Score = 273 bits (302), Expect = 3e-68 Identities = 588/872 (67%), Gaps = 8/872 (1%) Strand=Plus/Minus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || || || || || || ||||| ||||| |||||||| || | | || || Sbjct 43128 TTTCTGATACTCGCCAACGCGCTTCTCAAAAAAGTTAGTTTTCCCCTGAAGCGAAATCAA 43069 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| ||||||| ||||| ||||||||||||||| | | || | || | | Sbjct 43068 ATCCATCCAATCAAAAGGATTCTGAACATTATAAATTTTCCCACAACCAAGCTCACACAA 43009 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || |||||| ||||| || || |||||| |||||| |||| ||||||||| | | Sbjct 43008 CAATCTATCAGCAACAAACTCAATATACTGACTCATCAAATCACCATTCATTCCAACTAA 42949 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 | || || || || || ||| ||| || || |||||||| | || Sbjct 42948 AGCGCAAGGAAGCGCTTCGCAAACAAATTCTCTCTCGATCTCAACAGCATCGCGCACAAT 42889 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAA 46637 || | || || || || || | ||||| | | | || ||||| ||||| Sbjct 42888 CGTCTTCACACGCTCTTCGCTAAGTTTCTTTCTCAAAAGCGAATAAATCAAACAAGCAAA 42829 Query 46638 ATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT 46697 |||||||||||| ||||| || | ||| | ||||| ||||| || | |||||||| Sbjct 42828 ATCACAATGAAGTCCTTCGTCACGTGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCAT 42769 Query 46698 TAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 46757 || ||||| ||||| ||||| || || || |||| |||||| || ||||| ||||| Sbjct 42768 TAAACCACGTTTTTTAAGCCAGAAAATTGCACAGAAACTTCCAGAGAAAAATATACCTTC 42709 Query 46758 TACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACC--TT 46815 ||| || || || || | || || || | || || |||| ||||||| | | || Sbjct 42708 AACACAAGCAAAAGCAACGA-TC-CTTTCAGCAAATGA-ATCAG-ATGAATCGATCCATT 42653 Query 46816 TGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 46873 | | ||||||||||| || || | | |||||| || ||||| || |||| ||| | | Sbjct 42652 TCATAGCCCAATCAGCTTTCTTTGTAATACAAGGAATCGTTTCAATTGCATGAAACAAAC 42593 Query 46874 AGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAAT 46933 || || ||| | ||| || | ||| || || || || |||||||||||||| |||| Sbjct 42592 GATTCTTCTCAACTGAATCATTGATATAAGTCTCAATCAAGAGACTATACATTTCAGAAT 42533 Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT 46993 |||| || || || || ||||| |||||||| ||| | || || | | || || | Sbjct 42532 GAATATTCTCGATTGCGATCTGGAATCCGTAGAAAGCACGCGCCTCTGAGACTTGAACTT 42473 Query 46994 CTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATG 47053 || | |||| | | | | |||||| || || || || ||| ||||| || | Sbjct 42472 CTTTCATGAATCTTCCTGCAAGATTCTCCAAGACGATGCCGTCGGAAGCGGCAAAGAAGG 42413 Query 47054 CCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATAT 47113 | | || ||| ||||| | ||| || || || || ||||||| || | || Sbjct 42412 CAAGAACGTGTGAGATAAAGTGGCGTTCGCCGTCGGTTAGGTTGTTCCAGTGATGAAGAT 42353 Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173 ||| |||| ||| |||||||| || |||||||| || || || |||||||| ||||| | Sbjct 42352 CTTCCGATAAATCGACTTCTTCGGCGGTCCAGAAAGAAGCTTCGGCTTTTTTGTACATTT 42293 Query 47174 TCCATATATCACGATATTGGATCGGAAAAATA 47205 ||| || | | | ||||| || || || ||| Sbjct 42292 CCCAGATTTTAGGGTATTGAATTGGGAACATA 42261 >seq92 Length=773687 Score = 127 bits (140), Expect = 3e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || |||||||| | ||| | |||||||| ||| | || | ||||||||||| ||| || Sbjct 23836 CCCCCCTGATCAACATAACGGGCAGTGTCATTGAACACACGCAACATTGGAACAATACCA 23777 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| || |||||||||||| ||| ||||| ||| | ||||| || ||| || ||| Sbjct 23776 TTAGAAGTCCCATTTGTTCCACGAATGTAACTGCCATAGGCACGTATGTTATGAACAGAA 23717 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || |||| || | |||||| |||| || ||||| || Sbjct 23716 ACACCAATTCCTCCAGCAGATTTACTAATGACAGCACACTCCTTCAGAGTATCATAAATC 23657 Query 76934 CCCTCTATACTATCATCCATCAT 76956 ||||| |||||||| || |||| Sbjct 23656 CCCTCAATACTATCCTCTTTCAT 23634 Score = 96.9 bits (106), Expect = 5e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 76497 TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGAC 76556 ||||||| || ||||| | | |||||||| || |||||| ||| |||||||||| Sbjct 24318 TTTCATACTGAGTATACAGCTTCTCAAATTCTTCACCCCAACAATCTGCCAAACCAGGTG 24259 Query 76557 ATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGAT 76616 |||||| || || | ||| ||||| | |||| || ||| | ||||||||||||| Sbjct 24258 CTTCATTGGGGCAAAACAAGGACCATACCCCATTACTCTGAACTCTGTTCATAAAGAGAT 24199 Query 76617 CAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||| | ||| || ||| ||||| |||||| Sbjct 24198 CAGGCACCCAAAGGGCATAAAATAAATCTCG 24168 >seq6 Length=1263909 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||||||||| ||||| || ||||||||| |||| ||| || || ||||| || Sbjct 1160352 CAAGCAAAATCACAGTGAAGACCCTCATCTCTAGAGATTAGTTCATTTGAGAATGTCAGA 1160411 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGC 46727 || ||||||| ||| | |||||| ||||| ||||| || Sbjct 1160412 CCTGGCATTAATCCTCTCTTTTTAAGCCAGAATATGGC 1160449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712690006087680