Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq2319 428 6e-115 seq432 253 3e-62 seq1296 156 5e-33 seq318 132 6e-26 seq264 95.1 2e-14 seq177 95.1 2e-14 seq1868 93.3 5e-14 seq134 91.5 2e-13 >seq2319 Length=57875 Score = 428 bits (474), Expect = 6e-115 Identities = 453/594 (76%), Gaps = 2/594 (0%) Strand=Plus/Minus Query 183595 CCTGTTGCTGCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGT 183654 || ||||| ||||| || || || ||| || |||| || | ||||| || ||| Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 183655 GATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAG 183714 ||||||||||| || || ||| ||| || || |||| |||| |||| || || || ||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 183715 CACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCT 183774 || || || || ||||| || || |||||| | ||||| |||||||| ||||| || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 183775 CTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGA 183833 || |||||||| ||||||||||| |||| ||||| | | | | || | ||||| || || Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACTACAGA 18344 Query 183834 GTCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGT 183893 ||| || ||| | ||||||| ||||||||||| ||||| ||||| || ||||| Sbjct 18343 AAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGT 18284 Query 183894 CGCTGCTCATGGATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCG 183953 ||||||||||| || ||||| || |||||||||| || ||| || ||||| ||||| Sbjct 18283 AGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCG 18224 Query 183954 TTCTCTTCACTTCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGG 184013 |||| | || |||||||| ||||||||||| || || || ||||||||||| || | || Sbjct 18223 TTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGG 18164 Query 184014 TGTTAGCACTATGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGG 184073 | | || |||||||| || || | ||||| ||||| || ||||| ||| || ||||| Sbjct 18163 TATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTC 18104 Query 184074 TCAAGGTCGTGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGA 184133 |||||||||||| | ||||||||||| || || | ||||||||| ||||| ||||| Sbjct 18103 TCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 18044 Query 184134 AGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 184187 ||| ||||| || ||||| ||||| || |||||||| ||||| ||||| | ||| Sbjct 18043 AGTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq432 Length=331984 Score = 253 bits (280), Expect = 3e-62 Identities = 378/534 (71%), Gaps = 2/534 (0%) Strand=Plus/Plus Query 186177 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAA 186236 |||||| | | |||| ||||||||||| | || |||||| | | ||| |||| ||| Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 186237 CTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATG 186296 | || || || |||| |||||| || || ||||| || || | | |||||||| ||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 186297 CTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGTATCCGTCCATACAATGCCATTGCTTT 186355 | || || |||||| | ||| ||| | | | || || || ||||| || || || Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGCAATCGCATT 47668 Query 186356 TTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTC 186415 || ||||| || ||||| |||||| ||||||||| || || || || || ||||| Sbjct 47669 CTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGG 47728 Query 186416 ATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCA 186475 |||||||| || || ||||| || ||||| || ||| ||||| | | || |||| Sbjct 47729 TTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCA 47788 Query 186476 AGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGG 186535 ||| || || || ||||| || || ||||| || |||||||| || || ||| | | || Sbjct 47789 AGGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGG 47848 Query 186536 TGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGG 186595 | || || | | || || ||||| | ||| ||||||||||| | | ||||||||| Sbjct 47849 CGCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGG 47908 Query 186596 CGAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGAT 186655 || ||||| |||||| || || | | || |||| |||||||| ||||| || Sbjct 47909 GGATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAAT 47968 Query 186656 GGTCACTGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAA 186709 |||||| || ||| | || ||||| || ||||| || |||| ||| |||||| Sbjct 47969 GGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq1296 Length=110557 Score = 156 bits (172), Expect = 5e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 183655 GATGGTATGCCCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAG 183714 ||||||||||| || || ||| ||| || || |||| |||| |||| || || || ||| Sbjct 75574 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 75515 Query 183715 CACAACATCCTGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCT 183774 || || || || ||||| || || |||||| | ||||| |||||||| ||||| || || Sbjct 75514 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 75455 Query 183775 CTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACTGA 183833 || |||||||| ||||||||||| |||| ||||| | | | | || | ||||| || || Sbjct 75454 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACTACAGA 75396 Query 183834 GTCTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCT 183883 ||| || ||| | ||||||| ||||||||||| ||||| |||| Sbjct 75395 AAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCT 75346 >seq318 Length=400206 Score = 132 bits (146), Expect = 6e-26 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 183965 TCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTA 184024 ||||| | |||||||| || || || || |||||||||| | | ||| | || ||| Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTACTG 349152 Query 184025 TGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTG 184084 |||| || || | ||| | ||||| || ||||| ||| || ||||| ||||||||||| Sbjct 349153 TGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTG 349212 Query 184085 TCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACG 184144 | | ||||| ||||| || | | ||||||||| ||||| |||||||| ||||| Sbjct 349213 TAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATA 349272 Query 184145 AGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 184187 | ||||| |||| || || |||| || || ||||| | ||| Sbjct 349273 AACGTAACACTCATAATTTTCCTCCAGAGCTAGCTGCGGTTGA 349315 >seq264 Length=551193 Score = 95.1 bits (104), Expect = 2e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 183748 GGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACT 183807 ||||| |||||||| ||||| || || || |||||||| ||||||||||| |||| ||| Sbjct 291918 GGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACT 291977 Query 183808 TCCTCGCTGGTTC-GTGAAACCACTGAGTCTGAGTCACAGAACTATGGTTACAAGTTCGG 183866 | || | | | || | ||||| || || ||| || ||| | ||||||| ||||| Sbjct 291978 T-CTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGG 292036 Query 183867 TCAAGAAGAAGAGACCTACAA 183887 |||||| ||||| ||||| || Sbjct 292037 TCAAGAGGAAGAAACCTAAAA 292057 >seq177 Length=575278 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 170979 TTTGAATGTGCTGAAGATCAATATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTG 171038 ||||| ||| | || ||| || |||||||| |||||| ||| ||| |||| | Sbjct 226682 TTTGACTGTCCAGATGATGTTTACATTCTTGAACATGCTGAGGAACTTGGAATTGACCTT 226741 Query 171039 AACTATTCGTGTCGTGCTGGTGCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCT 171098 || || || | |||||| ||||||| | |||||||| ||| ||| | |||| | Sbjct 226742 CCTTACTCATGCAGAGCTGGTTCTTGTTCTTCTTGTGCTGGTAAAGTTGTTAATGGTGGT 226801 Query 171099 GTTGATCAATCCGATCAATCTTTCCTTGATGATGATCAGATTGAATCAGGTTTCATTCTG 171158 ||| |||| ||| ||||||||||||||||| || |||||| ||||| |||| Sbjct 226802 GTTAATCAGGAAGATGGTTCTTTCCTTGATGATGACCAAATTGAAGAAGGTTGGGTTCTT 226861 Query 171159 ACCTGCGTCTCATATCCTACAAGTGAT 171185 || || || | || |||||| |||| Sbjct 226862 ACTTGTGTTGCTTACCCTACATCTGAT 226888 >seq1868 Length=44937 Score = 93.3 bits (102), Expect = 5e-14 Identities = 91/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 186630 ACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTC 186689 || |||| |||||||| ||||| ||||||||||| ||| | || ||||| || ||||| Sbjct 39539 ACCCAAGCGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTT- 39597 Query 186690 GGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGT 186745 || |||| ||| |||||| |||||| | |||||||| ||| | ||||| || || Sbjct 39598 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGT 39653 >seq134 Length=619377 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 171005 TCTT-GATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGCTT 171063 |||| ||||| || || | |||||| |||| | |||||||| ||||| ||||| | Sbjct 606830 TCTTAGATGCAGCAGAGAATGCAGGAGTTGAACTTCCATATTCGTGCCGTGCCGGTGCAT 606771 Query 171064 GTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTTCC 171123 | || |||||||||||||| ||| ||||||||| ||||| || ||| || || | Sbjct 606770 GCTCTACCTGTGCTGGGAAGGTTGTTTCTGGTTCTGTGGATCAGTCTGATGGTTCATTTC 606711 Query 171124 TTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTACAAGTG 171183 ||||||| | ||| || || ||| | | || ||||| || | ||||| || | Sbjct 606710 TTGATGACGGTCAAATGGAGGAAGGCTATGTGCTAACCTGTGTGGCGTATCCAACTTCAG 606651 Query 171184 ATTGTGTAAT 171193 ||||||| || Sbjct 606650 ATTGTGTTAT 606641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621857154266880