Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq2319 403 2e-107 seq432 307 1e-78 seq1296 163 3e-35 seq318 105 7e-18 seq2286 102 9e-17 seq814 102 9e-17 seq2312 98.7 1e-15 seq2162 95.1 1e-14 seq1868 95.1 1e-14 seq686 95.1 1e-14 seq264 95.1 1e-14 seq145 95.1 1e-14 seq1196 93.3 5e-14 seq5156 89.7 6e-13 >seq2319 Length=57875 Score = 403 bits (446), Expect = 2e-107 Identities = 445/593 (75%), Gaps = 0/593 (0%) Strand=Plus/Minus Query 164327 CCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 164386 || || || || || | |||||| ||| || |||| || | ||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 164387 GATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAG 164446 |||| |||||||| || |||||||| || ||||||| ||| | || || ||||||||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 164447 CACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCT 164506 || || || || ||||| || || || ||| | || ||||| ||||| || ||||| || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 164507 CTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAA 164566 || |||||||| ||||||||||| |||| |||||| || | | || || || ||| Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 18343 Query 164567 AATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTT 164626 ||||| || ||| | ||||||| || ||||| || ||||||||||| || || || Sbjct 18342 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 18283 Query 164627 GCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGT 164686 || ||||| ||||| ||||| || |||| |||||||||||| ||||||||||| ||| Sbjct 18282 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGT 18223 Query 164687 TCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGC 164746 || | || |||||||| || || |||||||| || |||||||||||||| || | || Sbjct 18222 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGT 18163 Query 164747 GTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGT 164806 | || || ||||| ||||| | || || || || || ||||| ||| || | ||| | Sbjct 18162 ATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCT 18103 Query 164807 CAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAA 164866 || |||||||| | ||||||||||| || || | ||||||||| || || |||||| Sbjct 18102 CAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 18043 Query 164867 GTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 164919 || ||||| || ||||| ||||| || |||||||| ||||| ||||| | ||| Sbjct 18042 GTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq432 Length=331984 Score = 307 bits (340), Expect = 1e-78 Identities = 390/534 (73%), Gaps = 2/534 (0%) Strand=Plus/Plus Query 165369 CATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAA 165428 |||||| | || | || ||||||||||| | || || || || | ||| ||||| ||| Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 165429 CTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATG 165488 | || || || ||||||||||| || || ||||| || || | | | |||||||| ||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 165489 CTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTT 165547 | || || |||||||| || ||| || || | | || ||||| ||||| || || || Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGCAATCGCATT 47668 Query 165548 CTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTC 165607 ||| ||||| |||||||| || ||| ||| || ||||| ||||| ||||| || || Sbjct 47669 CTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGG 47728 Query 165608 CTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCA 165667 |||||||| ||||| || || || ||||| || || |||||| | ||||| |||| Sbjct 47729 TTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCA 47788 Query 165668 AGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGG 165727 |||||| ||||| ||||| | || || ||||| |||||||| || || ||| | || || Sbjct 47789 AGGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGG 47848 Query 165728 CGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGG 165787 || || | | | || |||||||| | ||| ||||| ||||| || | ||||||||| Sbjct 47849 CGCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGG 47908 Query 165788 TGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCAT 165847 || ||||| || ||| || ||| | || || | || ||||||||||| || Sbjct 47909 GGATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAAT 47968 Query 165848 GGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAA 165901 |||||| |||||||| || ||||| || || ||||| ||||||| |||||| Sbjct 47969 GGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq1296 Length=110557 Score = 163 bits (180), Expect = 3e-35 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 164381 TTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAG 164440 || || |||| |||||||| || |||||||| || ||||||| ||| | || || ||| Sbjct 75580 TTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAG 75521 Query 164441 GCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGC 164500 |||||||| || || || ||||| || || || ||| | || ||||| ||||| || ||| Sbjct 75520 GCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 75461 Query 164501 GGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACC 164560 || || || |||||||| ||||||||||| |||| |||||| || | | || || Sbjct 75460 GGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACT 75401 Query 164561 ACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCT 164615 || |||||||| || ||| | ||||||| || ||||| || |||||||||| Sbjct 75400 ACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCT 75346 >seq318 Length=400206 Score = 105 bits (116), Expect = 7e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 164697 TCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCA 164756 ||||| | || || || ||||| || ||||||||||||| | | || | || || Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTACTG 349152 Query 164757 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTG 164816 |||| ||||| | || | || || || ||||| ||| || | ||| ||| ||||||| Sbjct 349153 TGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTG 349212 Query 164817 TGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACG 164876 | | ||||| ||||| || | | ||||||||| || || |||||||| ||||| Sbjct 349213 TAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATA 349272 Query 164877 AGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 164919 | ||||| |||| || || |||| || || ||||| | ||| Sbjct 349273 AACGTAACACTCATAATTTTCCTCCAGAGCTAGCTGCGGTTGA 349315 >seq2286 Length=21248 Score = 102 bits (112), Expect = 9e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 165831 GAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCT 165890 || ||||||||||| |||||||| |||||||| || ||||| || || ||||| ||||| Sbjct 6804 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 6745 Query 165891 TTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGG 165950 || |||||| |||||| | || ||||||||| | ||||| || || | ||| | ||| Sbjct 6744 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACGGGTTTATGG 6685 Query 165951 A 165951 | Sbjct 6684 A 6684 >seq814 Length=198837 Score = 102 bits (112), Expect = 9e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 165831 GAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCT 165890 || ||||||||||| |||||||| |||||||| || ||||| || || ||||| ||||| Sbjct 115068 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 115127 Query 165891 TTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGG 165950 || |||||| |||||| | || ||||||||| | ||||| || || | ||| | ||| Sbjct 115128 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACGGGTTTATGG 115187 Query 165951 A 165951 | Sbjct 115188 A 115188 >seq2312 Length=20438 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 165831 GAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCT 165890 || ||||||||||| |||||||| |||||||| || ||||| || || ||||| ||||| Sbjct 19752 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 19693 Query 165891 TTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGT 165937 || |||||| |||||| | || ||||||||| | ||||| || || Sbjct 19692 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGT 19646 >seq2162 Length=26882 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 165831 GAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCT 165890 |||||||||||||| ||||||| |||||||| || ||||| || || ||||| ||||| Sbjct 20885 GAGGAAACTTATTCATTGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 20944 Query 165891 TTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGT 165937 || |||||| ||||| | || ||||||||| | ||||| || || Sbjct 20945 TTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTCCCAGT 20991 >seq1868 Length=44937 Score = 95.1 bits (104), Expect = 1e-14 Identities = 86/107 (80%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 165831 GAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCT 165890 || ||||||||||| ||||||||||||||||| || ||||| || | | |||| ||||| Sbjct 39548 GAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCA-AATCTTGGGGTTGCT 39606 Query 165891 TTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGT 165937 || |||||| |||||| | || ||||||||| | ||||| || || Sbjct 39607 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGT 39653 >seq686 Length=409839 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 165831 GAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCT 165890 || ||||||||||| |||||||| |||||||| || ||||| || || ||||| ||||| Sbjct 52881 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 52940 Query 165891 TTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGT 165937 || |||||| |||||| | || || |||||| | ||||| || || Sbjct 52941 TTTTCCAATAAACGTTGGTTACATTTGTTTATGTTATTTGTCCCAGT 52987 >seq264 Length=551193 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 164480 GGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACT 164539 || ||||| ||||| || ||||| || || |||||||| ||||||||||| |||| ||| Sbjct 291918 GGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACT 291977 Query 164540 TCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGT 164599 ||| || | | || || || |||||||| || ||| | ||||||| || ||| Sbjct 291978 TCTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGT 292037 Query 164600 CAGGAAGAAGAAACCTACAA 164619 || || ||||||||||| || Sbjct 292038 CAAGAGGAAGAAACCTAAAA 292057 >seq145 Length=649883 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/170 (73%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 164254 TTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGT 164313 ||||||||||||| |||||||||| || ||| | |||||||| ||||||||| || Sbjct 132356 TTACATGGGTCGTAAGTGGGAACTAAGTTTTCGTTTGGGTATGCGCCCTTGGATTGCTGT 132297 Query 164314 AGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCA 164373 ||||| || ||||| || || | || ||| | ||| | ||||||| | ||||| Sbjct 132296 TGCATATTCAGCTCCAGTTACTACTGC-AGT----TTTTCTTAATCTATCCAATTGGTCA 132242 Query 164374 AGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACT 164423 || || | |||| ||||||||||| |||||| | || ||||||| Sbjct 132241 GGGAAGCTTTTTAGATGGTATGCCTCTGGGAATCTCTAGTACTTTCAACT 132192 >seq1196 Length=183224 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 165831 GAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCT 165890 || ||||||||||| |||||||| |||||||| || ||||| || || ||||| ||||| Sbjct 19709 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 19650 Query 165891 TTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGT 165931 || |||||| ||||| | || ||||||||| | ||||| Sbjct 19649 TTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGT 19609 >seq5156 Length=1562 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 165831 GAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCT 165890 || ||||||||||| ||||||| |||||||| || ||||| || || || || ||||| Sbjct 912 GAAGAAACTTATTCAGTGGTCACCGCTAACCGCTTATGGTCCCAAATCTTCGGGGTTGCT 853 Query 165891 TTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCC 165934 || |||||| |||||| | || ||||||||| | ||||| || Sbjct 852 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCC 809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557463236071680