Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq322 111 1e-19 seq23 102 7e-17 seq933 93.3 4e-14 seq1436 89.7 4e-13 seq1039 89.7 4e-13 >seq322 Length=397916 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| || || | || || || ||||| || |||| || | Sbjct 333409 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACTTTGGAGGTTGAGAGTTTC 333350 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | | || ||| ||||||| || ||||| || |||| | || || Sbjct 333349 GATACTATTGACAATGTGAAAGCAAAAATTCAGGATAAAGAGGGTATTCCTCTGGACCAG 333290 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| |||| ||| ||||| || ||||||||| | ||| |||| ||||||||| Sbjct 333289 CAGAGGCTAATTTTTGCCGGCAAGCAGTTGGAAGATGGTTGTACTCTGGCTGATTATAAT 333230 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || |||||||| || || | || ||| | || || ||||||| Sbjct 333229 ATCCAGAAGGAATCTACTCTCCACCTGGTTTTGAGGCTTCGTGGTGGCA 333181 >seq23 Length=202804 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || || ||||| | |||||||||||||| ||| | || ||| || | Sbjct 5260 ATGCAAATCTTCGTGAAAACCCTAACCGGCAAAACCATAACCCTAGAGGTAGAATCCTCC 5319 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | | || ||| |||||| ||||| ||||| |||| |||||| Sbjct 5320 GACACCATCGACAACGTCAAAGCCAAAATTCAAGACAAGGAAGGAATTCCACCAGATCAA 5379 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | || || | || || |||||| | |||||| ||| | |||||||| || Sbjct 5380 CAACGTCTCATCTTCGCCGGAAAACAACTCGAAGATGGCCGTACTCTTGCCGATTACAAC 5439 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || ||||||||||| || || ||| | || | ||||| ||||| |||| Sbjct 5440 ATCCAAAAAGAATCCACGCTCCATCTCGTTCTCCGTCTCCGCGGAGGCA 5488 >seq933 Length=173040 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| || || | || || || ||||| || |||| || | Sbjct 29925 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACATTGGAGGTTGAGAGTTCC 29984 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | | || || ||||||| || ||||| || |||| || || Sbjct 29985 GATACAATTGACAATGTGAAGGCAAAAATTCAGGATAAAGAGGGTATTCCTCCAGACCAG 30044 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| |||| ||| || || || ||||||||| | ||| |||| ||||||||| Sbjct 30045 CAGAGGCTAATTTTTGCCGGGAAGCAGTTGGAAGATGGTCGTACTCTGGCTGATTATAAT 30104 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 || || || |||||||| | || || || ||| | || || ||||||| Sbjct 30105 ATCCAGAAGGAATCTACTTTGCACTTGGTTTTGAGGCTTCGTGGTGGCA 30153 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||||||||| || || ||||| || || || || || |||| || Sbjct 29696 AATGCAAATTTTTGTGAAGACTTTGACAGGAAAGACTATCACTTTGGAGGTTGAGAGTTC 29755 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| || ||| | || ||| || ||| || || ||||| | || |||||| Sbjct 29756 AGATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAAGGTATCCCTCCCGATCA 29815 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || |||||||| | ||| || || ||| | |||||| || || | || |||||||| Sbjct 29816 GCAGAGGCTTATCTTTGCTGGTAAGCAACTTGAAGATGGTAGGACACTTGCTGATTATAA 29875 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||| || || ||||| || |||||||| || || || Sbjct 29876 CATCCAAAAGGAATCCACTCTCCATTTGGTTTTGCGTCTTCGTGGGGG 29923 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||| || || | || || || || |||||| |||| |||| | Sbjct 30153 ATGCAAATATTTGTGAAGACCCTTACTGGGAAGACTATTACCTTGGAGGTGGAAAGCTCT 30212 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | | | | || ||| ||| ||| || || || || ||||| || || Sbjct 30213 GATACAATCGATAATGTGAAAGCAAAGATTCAAGATAAGGAGGGTATTCCCCCAGACCAG 30272 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || |||||||||| ||| || || || ||||| ||| | ||| |||| ||||| ||| Sbjct 30273 CAGAGGCTTATTTTTGCCGGTAAGCAGTTGGAGGATGGTCGTACTTTGGCAGATTACAAT 30332 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111327 || || ||||||||||| || || | || | ||||| || |||||| Sbjct 30333 ATTCAGAAAGAATCTACCCTCCACCTTGTTCTTCGTCTCCGTGGTGGC 30380 >seq1436 Length=88924 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| ||||||||||| | || || |||||||| || | ||| ||| || | Sbjct 38991 ATGCAAATCTTTGTCAAAACCCTAACTGGAAAAACCATCACACTCGAAGTTGAATCCTCC 38932 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | | || || || ||| || |||||||| | || ||||| Sbjct 38931 GACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCTCCTGATCAG 38872 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | || | ||| || || |||||||||||| | |||| | || ||||||||| Sbjct 38871 CAGCGATTGATCTTTGCAGGGAAGCAATTGGAAGATGGGAGAACTCTTGCGGATTATAAT 38812 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| || || || ||||||||| | || |||| || || Sbjct 38811 ATCCAGAAAGAGTCCACGCTTCATTTAGTGCTTCGGTTGCGTGGAGG 38765 >seq1039 Length=240209 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252 || |||||||| ||||| ||||| || ||| | |||| |||||| ||||| | ||| Sbjct 129209 GATAAAGAAGGTATTCCCCCAGATCAGCAGAGGTTGATTTTTGCGGGAAAACAGCTCGAA 129150 Query 111253 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111312 ||| | ||| |||| |||||||| || || ||||| || || || || | |||||| Sbjct 129149 GATGGCAGAACCCTGGCTGATTATAACATCCAGAAAGAGTCAACTCTTCACCTTGTGTTG 129090 Query 111313 CGTCTGCGCGGTGG 111326 ||||| || ||||| Sbjct 129089 CGTCTTCGTGGTGG 129076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421670218042624