Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq2319 376 3e-99 seq432 284 1e-71 seq1296 149 7e-31 seq219 125 9e-24 seq1196 102 1e-16 seq2286 100 3e-16 seq318 98.7 1e-15 seq2312 96.9 4e-15 seq814 96.9 4e-15 seq2162 95.1 1e-14 seq1868 93.3 5e-14 seq264 93.3 5e-14 seq5156 87.8 2e-12 seq96 84.2 3e-11 >seq2319 Length=57875 Score = 376 bits (416), Expect = 3e-99 Identities = 442/595 (74%), Gaps = 2/595 (0%) Strand=Plus/Minus Query 177997 CCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCT 178056 ||||| || || || |||| || ||| | | || || | ||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 178057 GACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAG 178116 || | |||||| || || ||| ||| || ||||||| ||| |||| || || || ||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 178117 CACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCT 178176 || || || || ||||| || || |||||||| || || |||||||| || || || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 178177 CTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACCGA 178235 || |||||||| ||||||||||| |||| ||||| | | | | || | ||||| || || Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAACTACAGA 18344 Query 178236 GAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGT 178295 || ||| | ||| | ||||||| ||||||||||| ||||| ||||| || || || Sbjct 18343 AAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGT 18284 Query 178296 TGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCG 178355 |||||||||||||| || || || |||||||||||||||| ||||||||||| || Sbjct 18283 AGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCG 18224 Query 178356 TTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGG 178415 ||| | || |||||||| || || |||||||| || ||||||||||| || || | || Sbjct 18223 TTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGG 18164 Query 178416 TGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAG 178475 | | || || ||||| ||||| | || || || || || ||||| ||| || | ||| Sbjct 18163 TATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTC 18104 Query 178476 TCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGA 178535 ||| || || | ||||||||||| || || | ||||||||| ||||||||||| Sbjct 18103 TCAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGA 18044 Query 178536 AGTCATGCACGAGCGTAATGCTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 ||| ||||| || ||||| ||||| || |||||||| ||||| ||||| | |||| Sbjct 18043 AGTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGAA 17989 >seq432 Length=331984 Score = 284 bits (314), Expect = 1e-71 Identities = 376/519 (72%), Gaps = 2/519 (0%) Strand=Plus/Plus Query 179070 CTATGGGGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGG 179129 || |||||||| ||||| ||||||||||| ||| ||| ||| | || || || ||| Sbjct 47505 CTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAATTAGGTGGTCTGTGG 47564 Query 179130 CCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAA 179189 ||||||| || || |||||||| |||| | |||||||| ||| | || || |||||| Sbjct 47565 ACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATGTTACGTCAATTTGAA 47624 Query 179190 ATCGCACG-TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGC 179248 | || || ||| || | | || ||||| ||||||||||| || || ||||||||||| Sbjct 47625 CTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGCAATCGCATTCTCCGGTCCAATTGC 47683 Query 179249 TGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCC 179308 ||| ||||| ||||| || || || ||||| || || ||||| ||||||||||| || Sbjct 47684 TGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGGTTGGTTCTTTGCACC 47743 Query 179309 GTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTG 179368 ||||| || ||||| || || || ||| | ||||| | || || || || || || Sbjct 47744 TAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCAAGGGTTTCATAATTG 47803 Query 179369 GACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTG 179428 ||| | ||||| || || |||||||| || || ||| | |||||| || | | || Sbjct 47804 GACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGGCGCCGCCCTATTATG 47863 Query 179429 TGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATAC 179488 || |||||||| ||||| ||||| || || | |||||||| | || ||||||| Sbjct 47864 CGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGGGGATGGTGCAAATAC 47923 Query 179489 ATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCG 179548 |||| || || | || || |||| || || || ||||| ||||| || || ||||| Sbjct 47924 ATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCG 47983 Query 179549 TTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAA 179587 || ||||| || |||||||| | || || |||||| Sbjct 47984 CTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq1296 Length=110557 Score = 149 bits (164), Expect = 7e-31 Identities = 176/236 (75%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 178051 TTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAA 178110 || || || | |||||| || || ||| ||| || ||||||| ||| |||| || || Sbjct 75580 TTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAG 75521 Query 178111 GCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGT 178170 || ||||| || || || ||||| || || |||||||| || || |||||||| || || Sbjct 75520 GCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 75461 Query 178171 GGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAAC 178229 || || || |||||||| ||||||||||| |||| ||||| | | | | || | ||||| Sbjct 75460 GGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTC-TAGTTTGATCAGGGAAAC 75402 Query 178230 CACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCT 178285 || || || ||| | ||| | ||||||| ||||||||||| ||||| |||| Sbjct 75401 TACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCT 75346 >seq219 Length=535087 Score = 125 bits (138), Expect = 9e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 177640 GGTTGGTTCGGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGT 177698 || ||||| ||||| ||||||||||||| | | | || || ||||| || || | Sbjct 252280 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTAT 252222 Query 177699 CGCTTTCGTCGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 177758 ||||||| | ||||| |||||||| || || || || || ||||| || || |||| || Sbjct 252221 CGCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATC 252162 Query 177759 CCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGG 177818 || | || || ||||| || ||||| ||||| || ||||| ||||| |||||||| Sbjct 252161 TCTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGCGGCTATTGG 252102 Query 177819 TCTCCACTTCTATCCCATCTGGGAAGCAGCTTC 177851 | | ||||| || || || |||||||| || || Sbjct 252101 TTTGCACTTTTACCCGATATGGGAAGCTGCATC 252069 >seq1196 Length=183224 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 179482 CAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTG 179541 ||||||||||| || || | || || |||| || || || ||||| ||||| || | Sbjct 19744 CAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACCG 19685 Query 179542 CCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATT 179601 | ||||| || ||||| || |||||||| | || || |||||| ||||| |||||| Sbjct 19684 CTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATT 19625 Query 179602 TCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGA 179637 |||||||||| ||||| | || | |||| | |||| Sbjct 19624 TCTTTATGTTATTTGTCCGAGTAACGGGTTTATGGA 19589 >seq2286 Length=21248 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 179505 CCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATC 179564 || || |||| || || || ||||| ||||| || || ||||| || ||||| || ||| Sbjct 6816 CCAACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATC 6757 Query 179565 TTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTC 179624 ||||| | || || |||||| |||||| |||||||||||||||| ||||| || || Sbjct 6756 TTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTA 6697 Query 179625 ATGGGTCTTTGGA 179637 | |||| | |||| Sbjct 6696 ACGGGTTTATGGA 6684 >seq318 Length=400206 Score = 98.7 bits (108), Expect = 1e-15 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 178367 TCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCA 178426 ||||| | || || || ||||| || ||||||||||| | | | ||| | || || Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTACTG 349152 Query 178427 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAG 178486 |||| ||||| | || | || || || ||||| ||| || | ||| ||| || | Sbjct 349153 TGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTG 349212 Query 178487 TCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACG 178546 | | ||||| ||||| || | | ||||||||| |||||||||||||| ||||| Sbjct 349213 TAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATA 349272 Query 178547 AGCGTAATGCTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 | ||||| |||| || || |||| || || ||||| | |||| Sbjct 349273 AACGTAACACTCATAATTTTCCTCCAGAGCTAGCTGCGGTTGAA 349316 >seq2312 Length=20438 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 179505 CCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATC 179564 || || |||| || || || ||||| ||||| || || ||||| || ||||| || ||| Sbjct 19764 CCAACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATC 19705 Query 179565 TTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTC 179624 ||||| | || || |||||| |||||| |||||||||||||||| ||||| || || Sbjct 19704 TTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTA 19645 Query 179625 ATGGGTCTTTGGA 179637 | ||| | |||| Sbjct 19644 ACAGGTTTATGGA 19632 >seq814 Length=198837 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 179517 GAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCC 179576 || || || ||||| ||||| || || ||||| || ||||| || |||||||| | || Sbjct 115068 GAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 115127 Query 179577 TTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGG 179636 || |||||| |||||| |||||||||||||||| ||||| || || | |||| | ||| Sbjct 115128 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACGGGTTTATGG 115187 Query 179637 A 179637 | Sbjct 115188 A 115188 >seq2162 Length=26882 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 179486 TACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAA 179545 ||||||| || || | || || |||| ||||| || ||||| |||| || || || Sbjct 20854 TACATTCCGTGCTTTTAACCCAACCCAAGCGGAGGAAACTTATTCATTGGTCACCGCTAA 20913 Query 179546 CCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTT 179605 ||| || ||||| || |||||||| | || || |||||| ||||| |||||||||| Sbjct 20914 CCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTT 20973 Query 179606 TATGTTGTTTGTTCCTGTCATGGGTCTTTGGA 179637 |||||| ||||| || || | ||| | |||| Sbjct 20974 TATGTTATTTGTCCCAGTAACTGGTTTATGGA 21005 >seq1868 Length=44937 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/138 (75%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 179486 TACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAA 179545 ||||||| || || | || || |||| || || || ||||| ||||| ||||| || Sbjct 39517 TACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACTGCTAA 39576 Query 179546 CCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTT 179605 ||| || ||||| || ||||| || | || || |||||| |||||| |||||||||| Sbjct 39577 CCGCTTTTGGTCCCAAATCTTGGGGTT-GCTTTTTCCAATAAACGTTGGTTACATTTCTT 39635 Query 179606 TATGTTGTTTGTTCCTGT 179623 |||||| ||||| || || Sbjct 39636 TATGTTATTTGTCCCAGT 39653 >seq264 Length=551193 Score = 93.3 bits (102), Expect = 5e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 178143 CATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCT 178202 || ||| || || |||||||| || || || || || |||||||| ||||||||||| | Sbjct 291911 CACGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCACGGTTCCTT 291970 Query 178203 GGTTACTTCCTCGCTGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACA 178261 ||| |||| || | | | || | ||||| || || || ||| | ||| | ||||||| Sbjct 291971 GGTAACTT-CTAGTTTGATCAGGGAAACTACAGAAAATGAATCTGCGAATGAAGGTTACA 292029 Query 178262 AGTTCGGTCAAGAAGAAGAGACCTACAA 178289 ||||||||||| ||||| ||||| || Sbjct 292030 GATTCGGTCAAGAGGAAGAAACCTAAAA 292057 >seq5156 Length=1562 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 179505 CCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATC 179564 || || |||| || || || ||||| |||| || || ||||| || ||||| || ||| Sbjct 924 CCAACCCAAGCGGAAGAAACTTATTCAGTGGTCACCGCTAACCGCTTATGGTCCCAAATC 865 Query 179565 TTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTC 179624 || || | || || |||||| |||||| |||||||||||||||| ||||| || | Sbjct 864 TTCGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAATA 805 Query 179625 ATGGGTCTTTGGA 179637 | |||| | |||| Sbjct 804 ACGGGTTTATGGA 792 >seq96 Length=755957 Score = 84.2 bits (92), Expect = 3e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 176181 GATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGTGCCTGTTCG 176240 ||||| || ||| | || |||||||||||| || |||||||| ||||| || || || Sbjct 745874 GATGCAGCAGAGAATGCTGGAGTTGAACTCCCTTATTCGTGCCGTGCTGGAGCATGCTCT 745815 Query 176241 AGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCGTTCCTTGAT 176300 | |||||| ||||| | | || || | || ||||| |||| ||||| | ||| Sbjct 745814 ACTTGTGCTGGAAAGATTGTTTCTGGTTCAGTGGATCAGTCCGATGGCTCGTTTTTGGAT 745755 Query 176301 GATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTACGAGCGATTGT 176360 || | || | | | ||| || | || || |||||||| ||||| || || | Sbjct 745754 GACAATCAACTTAAGGAAGGCTTTGTGCTTACCTGTGTTTCCTATCCAACCGCAGACGTT 745695 Query 176361 GTGATTGAGACTGAGAAAGAAGAGGAACTTTATTGA 176396 || ||||| ||| | || |||| ||||| || ||| Sbjct 745694 GTAATTGAAACTCACAAGGAAGGAGAACTCTACTGA 745659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596102785891840