Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq2319 379 2e-100 seq432 280 2e-70 seq1296 136 5e-27 seq2286 102 1e-16 seq2312 100 3e-16 seq814 100 3e-16 seq485 100 3e-16 seq1196 96.9 4e-15 seq1868 93.3 5e-14 seq5156 91.5 2e-13 seq2162 87.8 2e-12 seq145 82.4 9e-11 >seq2319 Length=57875 Score = 379 bits (420), Expect = 2e-100 Identities = 440/593 (74%), Gaps = 0/593 (0%) Strand=Plus/Minus Query 169751 CCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCT 169810 || ||||| || || | || |||||| || ||||||| |||| || || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 169811 GACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAG 169870 || | ||||||||| || ||||| || || || |||| ||| | || || || |||||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 169871 CACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCT 169930 || || || || ||||| || || |||||| | ||||| || || || || || || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 169931 CTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAG 169990 || || || || ||||||||| | | || ||||| ||| | || | ||||| || || Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 18343 Query 169991 AACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTT 170050 || || || ||| | ||||||| ||||||||||| ||||| ||||| || || || Sbjct 18342 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 18283 Query 170051 GCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGT 170110 || ||||| ||||| || || || ||||||||||||||||| ||||||||||| ||| Sbjct 18282 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGT 18223 Query 170111 TCACTGCACTTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGT 170170 || | || |||||||| || || |||||||| || || |||||||| ||||| | ||| Sbjct 18222 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGT 18163 Query 170171 GTCTCCACGATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGT 170230 || || ||||| ||||| | || || || || || ||||| ||| || | ||| | Sbjct 18162 ATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCT 18103 Query 170231 CAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAA 170290 || |||||||| | ||||||||||| || || | ||||||||| ||||| |||||| Sbjct 18102 CAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 18043 Query 170291 GTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCTGCTGCTGA 170343 || ||||| || ||||| ||||| || |||||||| ||||| ||||| | ||| Sbjct 18042 GTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq432 Length=331984 Score = 280 bits (310), Expect = 2e-70 Identities = 384/534 (72%), Gaps = 2/534 (0%) Strand=Plus/Plus Query 170811 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAA 170870 |||||| | | |||| ||||||||||| | ||||| ||||| || |||| ||| Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 170871 CTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATG 170930 | || || || |||| |||||| || || ||||| || || | | |||||||| ||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 170931 CTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGGGATTAGACCGTACAATGCAATCGCTTT 170989 | || || |||||| | ||| ||| || | | || || ||||||||||| || Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTGCGGCCTTATAATGCAATCGCATT 47668 Query 170990 CTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAG 171049 ||| ||||| || ||||| ||||| || ||||| || ||||| || || ||||| | Sbjct 47669 CTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGG 47728 Query 171050 TTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCA 171109 ||||||||| |||||| ||||| || ||||| || || || ||| | ||||| | || Sbjct 47729 TTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCA 47788 Query 171110 AGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGG 171169 ||| || || || |||||| | || ||||||||||||||||| ||||| ||| | | || Sbjct 47789 AGGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGG 47848 Query 171170 CGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGG 171229 || || | | | || |||||||| | ||| ||||| ||||| || | ||||||||| Sbjct 47849 CGCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGG 47908 Query 171230 TGATCAAGCAAACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTAT 171289 ||| ||||| || || || ||| || | || || | |||||| || ||||| || Sbjct 47909 GGATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAAT 47968 Query 171290 GGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAA 171343 |||||| ||||| || || ||||| || || ||||| | || || |||||| Sbjct 47969 GGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq1296 Length=110557 Score = 136 bits (150), Expect = 5e-27 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 169805 TTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAA 169864 || || || | ||||||||| || ||||| || || || |||| ||| | || || || Sbjct 75580 TTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAG 75521 Query 169865 GCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGT 169924 |||||||| || || || ||||| || || |||||| | ||||| || || || || || Sbjct 75520 GCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 75461 Query 169925 GGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACC 169984 || || || || || || ||||||||| | | || ||||| ||| | || | ||||| Sbjct 75460 GGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACT 75401 Query 169985 ACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCT 170039 || || || || || ||| | ||||||| ||||||||||| ||||| |||| Sbjct 75400 ACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCT 75346 >seq2286 Length=21248 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 171264 ACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTT 171323 || || | |||||| || ||||| |||||||| ||||| || || ||||| || || ||| Sbjct 6813 ACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 6754 Query 171324 GGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATG 171383 || | || || |||||| |||||||| |||||||||||| | ||||| || || | | Sbjct 6753 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACG 6694 Query 171384 GGTCTTTGGGTCAGTA 171399 ||| | ||| | |||| Sbjct 6693 GGTTTATGGATGAGTA 6678 >seq2312 Length=20438 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 171252 GCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGG 171311 || ||| || | || || | |||||| || ||||| |||||||| ||||| || || ||| Sbjct 19773 GCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 19714 Query 171312 TCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTT 171371 || || || ||||| | || || |||||| |||||||| |||||||||||| | ||| Sbjct 19713 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 19654 Query 171372 GTTCCTGTCATGGGTCTTTGGGTCAGTA 171399 || || || | ||| | ||| | |||| Sbjct 19653 GTCCCAGTAACAGGTTTATGGATGAGTA 19626 >seq814 Length=198837 Score = 100 bits (110), Expect = 3e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 171272 GGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGGTATCGC 171331 |||||| || ||||| |||||||| ||||| || || ||||| || || ||||| | || Sbjct 115067 GGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGC 115126 Query 171332 GTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGGTCTTTG 171391 || |||||| |||||||| |||||||||||| | ||||| || || | |||| | || Sbjct 115127 TTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACGGGTTTATG 115186 Query 171392 GGTCAGTA 171399 | | |||| Sbjct 115187 GATGAGTA 115194 >seq485 Length=309328 Score = 100 bits (110), Expect = 3e-16 Identities = 101/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 171483 TTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCA 171542 || ||||| ||||| || || || || || || || |||||| |||||||||||||||| Sbjct 82761 TTTGAGACTTTCTACACAAA-AATATTCTCTTAAACGAAGGTATTCGTGCATGGATGGCG 82819 Query 171543 CCAGTAGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAAT 171602 | |||| || || ||||||||| || | ||||| ||||| |||||||| ||||| || Sbjct 82820 ACTATAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAAC 82879 Query 171603 GCACTTTGAT 171612 | |||| || Sbjct 82880 ACTCTTTAAT 82889 >seq1196 Length=183224 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 171252 GCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGG 171311 || ||| || | || || | |||||| || ||||| |||||||| ||||| || || ||| Sbjct 19730 GCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 19671 Query 171312 TCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTT 171371 || || || ||||| | || || |||||| ||||||| |||||||||||| | ||| Sbjct 19670 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTT 19611 Query 171372 GTTCCTGTCATGGGTCTTTGGGTCAGTA 171399 || | || | |||| | ||| | |||| Sbjct 19610 GTCCGAGTAACGGGTTTATGGATGAGTA 19583 >seq1868 Length=44937 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 171252 GCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGG 171311 || ||| || | || || | |||||| || ||||| |||||||||||||| || || ||| Sbjct 39527 GCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGG 39586 Query 171312 TCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTT 171371 || || | | |||| | || || |||||| |||||||| |||||||||||| | ||| Sbjct 39587 TCCCA-AATCTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 39645 Query 171372 GTTCCTGT 171379 || || || Sbjct 39646 GTCCCAGT 39653 >seq5156 Length=1562 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 171252 GCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGG 171311 || ||| || | || || | |||||| || ||||| ||||||| ||||| || || ||| Sbjct 933 GCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAGTGGTCACCGCTAACCGCTTATGG 874 Query 171312 TCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTT 171371 || || || || || | || || |||||| |||||||| |||||||||||| | ||| Sbjct 873 TCCCAAATCTTCGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 814 Query 171372 GTTCCTGTCATGGGTCTTTGGGTCAGTA 171399 || || | | |||| | ||| | |||| Sbjct 813 GTCCCAATAACGGGTTTATGGATGAGTA 786 >seq2162 Length=26882 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 171252 GCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGG 171311 || ||| || | || || | ||| || || ||||| ||||||| ||||| || || ||| Sbjct 20864 GCTTTTAACCCAACCCAAGCGGAGGAAACTTATTCATTGGTCACCGCTAACCGCTTTTGG 20923 Query 171312 TCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTT 171371 || || || ||||| | || || |||||| ||||||| |||||||||||| | ||| Sbjct 20924 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTT 20983 Query 171372 GTTCCTGTCATGGGTCTTTGGGTCAGTA 171399 || || || | ||| | ||| | |||| Sbjct 20984 GTCCCAGTAACTGGTTTATGGATGAGTA 21011 >seq145 Length=649883 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 169678 TTACATGGGTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGT 169737 ||||||||||||| |||||||| | | |||| ||||||||||||||||||| ||| Sbjct 132356 TTACATGGGTCGTAAGTGGGAACTAAGTTTTCGTTTGGGTATGCGCCCTTGGATTGCTGT 132297 Query 169738 TGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCA 169797 ||| || || ||||| ||| | | || ||||| | |||| || |||| || Sbjct 132296 TGCATATTCAGCTCCAGTTACTACTGC-----AGTTTTTCTTAATCTATCCAATTGGTCA 132242 Query 169798 AGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACT 169847 || || | || | |||||||||||| ||||| | || || |||| Sbjct 132241 GGGAAGCTTTTTAGATGGTATGCCTCTGGGAATCTCTAGTACTTTCAACT 132192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591995394388480